; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004477 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004477
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description50S ribosomal protein L24
Genome locationscaffold804:407078..407755
RNA-Seq ExpressionMS004477
SyntenyMS004477
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR003256 - Ribosomal protein L24
IPR005824 - KOW
IPR005825 - Ribosomal protein L24/L26, conserved site
IPR008991 - Translation protein SH3-like domain superfamily
IPR014722 - Ribosomal protein L2, domain 2
IPR041988 - Ribosomal protein L26/L24, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577405.1 50S ribosomal protein L24, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.4e-6792.36Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV VKEINLKTKHVKSREEEE+GQIIK+EAPIHSSNVMLYSKE++VASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLE+G+RVRYLIKTGEIIDS +NWKKLKEEKSKTEVA+TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

KAG7015483.1 50S ribosomal protein L24, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]6.4e-6792.36Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV VKEINLKTKHVKSREEEE+GQIIK+EAPIHSSNVMLYSKE++VASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLE+G+RVRYLIKTGEIIDS +NWKKLKEEKSKTEVA+TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

XP_022142723.1 50S ribosomal protein L24, chloroplastic [Momordica charantia]9.6e-7198.61Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+VKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

XP_022985267.1 50S ribosomal protein L24, chloroplastic [Cucurbita maxima]6.4e-6792.36Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHV+VGDTVKVIAGRDKGKIGEITKIFKHNSKV VKEINLKTKHVKSREEEEKGQIIK+EAPIHSSNVMLYSKE++VASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLE+G+RVRYLIKTGEIIDS +NWKKLKEEKSKTEVA TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

XP_038903308.1 50S ribosomal protein L24, chloroplastic [Benincasa hispida]2.2e-6793.75Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+GQIIKIEAPIHSSNVMLYSKEQNVASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLE+G+RVRYLIKTGEIIDS ENWKKLKEE SKTEVA TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

TrEMBL top hitse value%identityAlignment
A0A1S3BTL8 50S ribosomal protein L24, chloroplastic2.6e-6692.36Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+GQIIKIEAPIHSSNVMLYSKEQNV SR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHK LE G+RVRYLIKTGEIIDS ENWKKLKE KSKTEVA TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

A0A5D3BUT2 50S ribosomal protein L242.6e-6692.36Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+GQIIKIEAPIHSSNVMLYSKEQNV SR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHK LE G+RVRYLIKTGEIIDS ENWKKLKE KSKTEVA TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

A0A6J1CNZ8 50S ribosomal protein L24, chloroplastic4.6e-7198.61Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+VKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

A0A6J1ESD2 50S ribosomal protein L24, chloroplastic4.1e-6792.36Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV VKEINLKTKHVKSREEEE+GQIIK+EAPIHSSNVMLYSKE++VASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLE+G+RVRYLIKTGEIIDS +NWKKLKEEKSKTEVA TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

A0A6J1J4F0 50S ribosomal protein L24, chloroplastic3.1e-6792.36Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHV+VGDTVKVIAGRDKGKIGEITKIFKHNSKV VKEINLKTKHVKSREEEEKGQIIK+EAPIHSSNVMLYSKE++VASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTLE+G+RVRYLIKTGEIIDS +NWKKLKEEKSKTEVA TA
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

SwissProt top hitse value%identityAlignment
B1XJS8 50S ribosomal protein L241.4e-3259.29Show/hide
Query:  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQ
        + +S P  HKMHVK GDTV+VI+GRDKGK+GE+ K    +SKV+VK++N++TKHVK ++E E GQI   EAPIHSSNVM YS+++ VASR+G++  E G+
Subjt:  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQ

Query:  RVRYLIKTGEIID
        +VR L KTGE+ID
Subjt:  RVRYLIKTGEIID

P11893 50S ribosomal protein L24, chloroplastic4.6e-6081.94Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHK+HVKVGDTVKVI+G +KG+IGEITKIFKHNS V+VK+INLKTKHVKS +E E GQI K+EAPIHSSNVMLYSKE++V SR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKT-EVAAT
        VGHK LE+G+RVRYLIKTGEIIDS ENWKKLKE   KT EVAAT
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKT-EVAAT

P27683 50S ribosomal protein L24, chloroplastic5.9e-5573.79Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        ++KRWERK+CKPNSLP LHKMHVKVGDTVKVI+G +KGKIGEI+KI KHNS V++K++NLKTKHVKS+EE E+GQIIKIEA IHSSNVMLYSKEQ VASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEK-SKTEVAATA
        VGHK LE G++VRYLIKTGEI+D+ + WK+++ +K S+T VA  A
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEK-SKTEVAATA

P92959 50S ribosomal protein L24, chloroplastic5.1e-5976.71Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +++K++NLKTKH+KSREE E GQI+KIEAPIHSSNVMLYSKE++V SR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSK--TEVAATA
        VGHK LE GQ+VRYLIKTGE+ID+ E WK LKE K K  T+VA T+
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSK--TEVAATA

Q02764 50S ribosomal protein L24, chloroplastic3.8e-6281.25Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLPVLHKMHVK+GDTVK+I+G DKGK+GEIT+I KHNSKV+VK++NLKTKHVKSR E+E GQI+KIEAPIHSSNVMLYSKEQ VASR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA
        VGHKTL++G+RVRYLIKTGEIIDSAENWKK  +EK KT  A  A
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

Arabidopsis top hitse value%identityAlignment
AT5G23535.1 KOW domain-containing protein1.4e-1139.36Show/hide
Query:  GDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTG
        GD V +I G+DKG+ G I ++ +  ++V+V+  NL  KH+K   + E G I  +EAP+H+SNV +         +VG K LE G +VR    TG
Subjt:  GDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTG

AT5G54600.1 Translation protein SH3-like family protein3.6e-6076.71Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +++K++NLKTKH+KSREE E GQI+KIEAPIHSSNVMLYSKE++V SR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSK--TEVAATA
        VGHK LE GQ+VRYLIKTGE+ID+ E WK LKE K K  T+VA T+
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSK--TEVAATA

AT5G54600.2 Translation protein SH3-like family protein1.1e-4867.81Show/hide
Query:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR
        +LKRWERKECKPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +                    GQI+KIEAPIHSSNVMLYSKE++V SR
Subjt:  QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASR

Query:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSK--TEVAATA
        VGHK LE GQ+VRYLIKTGE+ID+ E WK LKE K K  T+VA T+
Subjt:  VGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSK--TEVAATA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCTAAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCGGTATTACACAAAATGCATGTCAAGGTTGGAGACACGGTGAAAGTTATTGCTGGCCGTGATAA
GGGAAAAATTGGAGAAATCACAAAAATTTTTAAACATAATAGCAAAGTGATGGTGAAAGAAATAAATTTGAAGACAAAGCATGTAAAGAGCAGAGAAGAGGAAGAAAAAG
GACAGATTATCAAGATTGAGGCGCCCATCCATAGCTCGAACGTGATGCTTTACTCAAAAGAACAAAATGTAGCGAGCCGGGTCGGTCACAAAACCCTTGAAAGTGGACAA
CGAGTACGCTATCTCATTAAAACTGGCGAAATAATTGACAGTGCGGAAAATTGGAAGAAACTGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTGCAACTGCT
mRNA sequenceShow/hide mRNA sequence
CAGCTAAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCGGTATTACACAAAATGCATGTCAAGGTTGGAGACACGGTGAAAGTTATTGCTGGCCGTGATAA
GGGAAAAATTGGAGAAATCACAAAAATTTTTAAACATAATAGCAAAGTGATGGTGAAAGAAATAAATTTGAAGACAAAGCATGTAAAGAGCAGAGAAGAGGAAGAAAAAG
GACAGATTATCAAGATTGAGGCGCCCATCCATAGCTCGAACGTGATGCTTTACTCAAAAGAACAAAATGTAGCGAGCCGGGTCGGTCACAAAACCCTTGAAAGTGGACAA
CGAGTACGCTATCTCATTAAAACTGGCGAAATAATTGACAGTGCGGAAAATTGGAAGAAACTGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTGCAACTGCT
Protein sequenceShow/hide protein sequence
QLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVMVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQ
RVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA