CuGenDBv2

Gene ID	MS004498
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	scaffold1189:86679..87062
RNA-Seq Expression	MS004498
Synteny	MS004498
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM89146.1 RNA polymerase beta subunit [Lagenaria siceraria]

3.1e-57

89.84

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKI+FSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

AHM90092.1 RNA polymerase beta subunit [Lagenaria siceraria]

3.1e-57

89.84

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKI+FSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

YP_009430619.1 RNA polymerase beta subunit [Gynostemma cardiospermum]

9.8e-59

91.41

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLECQVARDSGVAAIAEH GKIIYTDTDKILFSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

YP_009440236.1 RNA polymerase beta subunit [Gynostemma burmanicum (nom. inval.)]

2.4e-57

90.62

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKILFSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

YP_009456053.1 RNA polymerase beta subunit [Momordica charantia]

2.4e-57

90.62

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKILFSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

TrEMBL top hits

e value

%identity

Alignment

A0A286KTW8 DNA-directed RNA polymerase subunit beta

4.7e-59

91.41

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLECQVARDSGVAAIAEH GKIIYTDTDKILFSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

A0A291IAB3 DNA-directed RNA polymerase subunit beta

4.7e-59

91.41

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLECQVARDSGVAAIAEH GKIIYTDTDKILFSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

A0A291IBA5 DNA-directed RNA polymerase subunit beta

1.2e-57

90.62

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKILFSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

A0A2I6BZX6 DNA-directed RNA polymerase subunit beta

1.2e-57

90.62

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKILFSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

X2F838 DNA-directed RNA polymerase subunit beta

1.5e-57

89.84

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKI+FSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

SwissProt top hits

e value

%identity

Alignment

A4QL98 DNA-directed RNA polymerase subunit beta

1.4e-52

80.47

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVA DSGV AIAEHEGKI+YTDT+KI+FSGNG T  IPL MYQRSNKNTCM QK QV +GKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKN+LVAYMPWEGYN EDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

A6MM28 DNA-directed RNA polymerase subunit beta

2.9e-53

82.03

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE Q A DSGV+AIAEHEGKIIYTD DKI+ SGNG T RIPL MYQRSNKNTCM QK QV +GKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

Q0G9M7 DNA-directed RNA polymerase subunit beta

2.6e-54

82.03

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLECQ A DSGV+AIAEHEGKI+YTDTDKI+ SGNG T  IPL MYQRSNKNTCM QK QV +GKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

Q0ZJ28 DNA-directed RNA polymerase subunit beta

1.1e-52

80.47

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE Q A DSGV  IAEHEGKI+YTDTDKI+ SGNG T  IPL MYQRSNKNTCM QK+QV +GKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYNSEDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

Q4VZP1 DNA-directed RNA polymerase subunit beta

2.7e-59

89.06

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Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVARDSGVAAIAEH GKIIYTDTDKI+FSGNGYTRRIPL MYQRSNKNTCMQQKSQVHQGKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKNVLVAYMPWEGYN EDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

1.3e-53

80.47

Show/hide

Query:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA
        ++  +MQRQAV LSRSEKCIVGTGLE QVA DSGV AIAEHEGKI+YTDT+KI+FSGNG T  IPL MYQRSNKNTCM QK QV +GKCIKKGQILAD A
Subjt:  ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSA

Query:  ATVGGKHALGKNVLVAYMPWEGYNSEDA
        ATVGG+ ALGKN+LVAYMPWEGYN EDA
Subjt:  ATVGGKHALGKNVLVAYMPWEGYNSEDA

Sequences

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CDS sequence

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ATTTTGAAATGGAGCATGCAACGTCAAGCAGTCCTGCTTTCTCGATCCGAAAAGTGCATTGTTGGAACTGGGTTGGAATGCCAAGTGGCTCGAGATTCAGGGGTTGCCGC
TATAGCCGAACATGAGGGAAAGATCATTTATACCGATACTGACAAGATCCTTTTTTCAGGCAATGGGTATACTCGAAGAATTCCATTAGCTATGTATCAACGTTCTAACA
AAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAGGGTAAATGCATTAAAAAAGGGCAAATTTTAGCAGACAGTGCTGCTACAGTTGGTGGCAAACATGCTTTGGGA
AAAAATGTATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGATGCG

mRNA sequence

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Protein sequence

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ILKWSMQRQAVLLSRSEKCIVGTGLECQVARDSGVAAIAEHEGKIIYTDTDKILFSGNGYTRRIPLAMYQRSNKNTCMQQKSQVHQGKCIKKGQILADSAATVGGKHALG
KNVLVAYMPWEGYNSEDA

MS004498 (gene) of Bitter gourd (TR) v1 genome