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MS004499 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004499
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold1189:104867..105115
RNA-Seq ExpressionMS004499
SyntenyMS004499
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_006471930.1 uncharacterized protein LOC102617744 [Citrus sinensis]1.1e-0740.26Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTL
        P CP CH S+ET  HALF+C  AR  WNLA  T  L  +       + + L  +  + E EL  + CW++W  RN L
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTL

XP_022145060.1 uncharacterized protein LOC111014578 [Momordica charantia]3.5e-0939.76Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI
        P C  C   IET  HALF C RA+ +WN+ LP A      N S  D    L++SL+  + +L  +  W++WNDRN +  Q+ I
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]5.1e-0839.29Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALP-TAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI
        P C  C    E+ +HA F C RAR IW    P    L    N+SF + W  L + L  +++ LAAI  W +WNDRN+L   K +
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALP-TAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI

XP_030505004.1 uncharacterized protein LOC115719975 [Cannabis sativa]3.3e-0736.9Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRN--TLNQQKL
        P+CP C    ET  HAL DC+R+R +W  +   A      +L   + +  LLQSL+K +I +     W++WN RN   LNQ  +
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRN--TLNQQKL

XP_042969075.1 uncharacterized protein LOC122301758 [Carya illinoinensis]1.1e-0733.77Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTL
        P+CP CH   E+ +HAL+ CN  +++W ++L      +++  SF + W +L+  L+ EE+E  A   + +W  RN+L
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTL

TrEMBL top hitse value%identityAlignment
A0A2N9EY21 Reverse transcriptase domain-containing protein3.8e-0942.67Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRN
        P+CP C +  ET +HAL+ C  ARN+W L         +  + F    + L QSLN++E+EL A+ CWS+WN RN
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRN

A0A6J1CTE3 uncharacterized protein LOC1110145781.7e-0939.76Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI
        P C  C   IET  HALF C RA+ +WN+ LP A      N S  D    L++SL+  + +L  +  W++WNDRN +  Q+ I
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI

A0A6J1DX30 uncharacterized protein LOC1110248742.5e-0839.29Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALP-TAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI
        P C  C    E+ +HA F C RAR IW    P    L    N+SF + W  L + L  +++ LAAI  W +WNDRN+L   K +
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALP-TAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI

A0A7J6HXN5 zf-RVT domain-containing protein7.9e-0737.18Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLN
        P C  C++  ET  HALF C RA+++W L+      P L   S +D    L  +L+  + EL  ++CWS+W++RN +N
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLN

A0A803PZ76 Uncharacterized protein1.6e-0736.9Show/hide
Query:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRN--TLNQQKL
        P+CP C    ET  HAL DC+R+R +W  +   A      +L   + +  LLQSL+K +I +     W++WN RN   LNQ  +
Subjt:  PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRN--TLNQQKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CCCATGTGCCCTTGCTGTCATGCCTCTATTGAGACTGAACTCCATGCTCTCTTTGATTGTAATCGAGCTCGGAATATCTGGAACCTTGCACTTCCTACTGCCGCTCTTCC
TCTCCTATTGAATTTAAGCTTCTCGGATCATTGGGAAGTTTTATTACAATCCTTGAACAAGGAGGAGATCGAATTAGCAGCAATTATCTGTTGGTCGATGTGGAATGATA
GAAACACCTTAAACCAACAAAAACTGATC
mRNA sequenceShow/hide mRNA sequence
CCCATGTGCCCTTGCTGTCATGCCTCTATTGAGACTGAACTCCATGCTCTCTTTGATTGTAATCGAGCTCGGAATATCTGGAACCTTGCACTTCCTACTGCCGCTCTTCC
TCTCCTATTGAATTTAAGCTTCTCGGATCATTGGGAAGTTTTATTACAATCCTTGAACAAGGAGGAGATCGAATTAGCAGCAATTATCTGTTGGTCGATGTGGAATGATA
GAAACACCTTAAACCAACAAAAACTGATC
Protein sequenceShow/hide protein sequence
PMCPCCHASIETELHALFDCNRARNIWNLALPTAALPLLLNLSFSDHWEVLLQSLNKEEIELAAIICWSMWNDRNTLNQQKLI