; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004512 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004512
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTetratricopeptide-like helical
Genome locationscaffold1189:243095..247700
RNA-Seq ExpressionMS004512
SyntenyMS004512
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147349.3 uncharacterized protein LOC101214268 [Cucumis sativus]5.7e-10683.01Show/hide
Query:  IKLCEFIMENRKIRLKFCHQNQ-TDMNSATARVLIPHLPFPSSSSSS-----NPNPKPSKPL-----NRLPTRRLFLFSLPIATAFVLPIPTNPILPSSC
        +K  +F MEN KIRLKFCHQN+ T M S TAR+LIPHL  PSSSSSS     N   K SKPL     N LPTRRL LFSLPIATAF+LPIP NPI PSS 
Subjt:  IKLCEFIMENRKIRLKFCHQNQ-TDMNSATARVLIPHLPFPSSSSSS-----NPNPKPSKPL-----NRLPTRRLFLFSLPIATAFVLPIPTNPILPSSC

Query:  GALEGFNPVTPSERDASAAVSRRVSEAVELLDKGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEV
         A+E F+PV+ SE+DASAA+SRRVSEAVELLDKGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEV
Subjt:  GALEGFNPVTPSERDASAAVSRRVSEAVELLDKGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEV

Query:  HAALAAALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        HAALAAALYVDKHA LLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
Subjt:  HAALAAALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS

XP_022156688.1 uncharacterized protein LOC111023534 [Momordica charantia]1.5e-11799.11Show/hide
Query:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLNRLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDKGR
        MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLNRLP+RRLFLFSLP ATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDKGR
Subjt:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLNRLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDKGR

Query:  ELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDI
        ELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDI
Subjt:  ELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDI

Query:  SYVKETKHWPPSLISSLQHFLTLS
        SYVKETKHWPPSLISSLQHFLTLS
Subjt:  SYVKETKHWPPSLISSLQHFLTLS

XP_022932010.1 uncharacterized protein LOC111438340 [Cucurbita moschata]9.5e-10187.67Show/hide
Query:  MNSATARVLIPHLPFPSSSSSSNPNP-KPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLD
        M S TAR LIPHL FPSSS++ NPNP KPSKP++  RLPTRRL LFSLPIATA +LPIP+NPI PSSC ALE F+PV+ SER+ASAA+SRRVSEAVELLD
Subjt:  MNSATARVLIPHLPFPSSSSSSNPNP-KPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLD

Query:  KGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
        KGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
Subjt:  KGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY

Query:  VDISYVKETKHWPPSLISSLQHFLTLS
        VDISYVKETKHWPPSLISSL++FLTLS
Subjt:  VDISYVKETKHWPPSLISSLQHFLTLS

XP_022971626.1 uncharacterized protein LOC111470308 [Cucurbita maxima]2.2e-9785.4Show/hide
Query:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDK
        M S TA  LIPHL FPSSS++ NPN KPSKP++  RLPT+RL LFSLPIATA +LPIP+NPI PSSC ALE F+PV+ SER+ASA +SRRVSEAVELLDK
Subjt:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDK

Query:  GRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV
        GRELQALGDF++ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV
Subjt:  GRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV

Query:  DISYVKETKHWPPSLISSLQHFLTLS
        DISYVKETKHWPPSLISSL++FLTLS
Subjt:  DISYVKETKHWPPSLISSLQHFLTLS

XP_023512389.1 uncharacterized protein LOC111777156 [Cucurbita pepo subsp. pepo]4.3e-10187.67Show/hide
Query:  MNSATARVLIPHLPFPSSSSSSNPNP-KPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLD
        M S TAR LIPHL FPSSS++ NPNP KPSKP++  RLPTRRL LFSLPIATA +LPIP+NPI PSSCGALE F+PV+ SER+ASAA+SRRVSEAVELLD
Subjt:  MNSATARVLIPHLPFPSSSSSSNPNP-KPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLD

Query:  KGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
        KGRELQALGDF+ ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
Subjt:  KGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY

Query:  VDISYVKETKHWPPSLISSLQHFLTLS
        VDISYVKETKHWPPSLISSL++FLTLS
Subjt:  VDISYVKETKHWPPSLISSLQHFLTLS

TrEMBL top hitse value%identityAlignment
A0A0A0LN32 Uncharacterized protein2.8e-10683.01Show/hide
Query:  IKLCEFIMENRKIRLKFCHQNQ-TDMNSATARVLIPHLPFPSSSSSS-----NPNPKPSKPL-----NRLPTRRLFLFSLPIATAFVLPIPTNPILPSSC
        +K  +F MEN KIRLKFCHQN+ T M S TAR+LIPHL  PSSSSSS     N   K SKPL     N LPTRRL LFSLPIATAF+LPIP NPI PSS 
Subjt:  IKLCEFIMENRKIRLKFCHQNQ-TDMNSATARVLIPHLPFPSSSSSS-----NPNPKPSKPL-----NRLPTRRLFLFSLPIATAFVLPIPTNPILPSSC

Query:  GALEGFNPVTPSERDASAAVSRRVSEAVELLDKGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEV
         A+E F+PV+ SE+DASAA+SRRVSEAVELLDKGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEV
Subjt:  GALEGFNPVTPSERDASAAVSRRVSEAVELLDKGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEV

Query:  HAALAAALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
        HAALAAALYVDKHA LLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS
Subjt:  HAALAAALYVDKHAPLLAENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS

A0A5D3BSI6 Tetratricopeptide-like helical2.3e-8481.57Show/hide
Query:  MNSATARVLIPHLPFPSSSSSS-----------NPNPKPSKPL-----NRLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAA
        M S TAR+LIPHL FPSSSSSS           NP+ K SKPL     N LPTRRL LFSLPIATAF+LPIP NPI PSS  A+E F+PV+ SE++ASAA
Subjt:  MNSATARVLIPHLPFPSSSSSS-----------NPNPKPSKPL-----NRLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAA

Query:  VSRRVSEAVELLDKGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAE
        +SRRVSEAVELLDKGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHA LLAE
Subjt:  VSRRVSEAVELLDKGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAE

Query:  NQFTIATLLDPHYVDIS
        NQFTIATLLDPHYVDIS
Subjt:  NQFTIATLLDPHYVDIS

A0A6J1DRA5 uncharacterized protein LOC1110235347.0e-11899.11Show/hide
Query:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLNRLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDKGR
        MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLNRLP+RRLFLFSLP ATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDKGR
Subjt:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLNRLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDKGR

Query:  ELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDI
        ELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDI
Subjt:  ELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYVDI

Query:  SYVKETKHWPPSLISSLQHFLTLS
        SYVKETKHWPPSLISSLQHFLTLS
Subjt:  SYVKETKHWPPSLISSLQHFLTLS

A0A6J1F108 uncharacterized protein LOC1114383404.6e-10187.67Show/hide
Query:  MNSATARVLIPHLPFPSSSSSSNPNP-KPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLD
        M S TAR LIPHL FPSSS++ NPNP KPSKP++  RLPTRRL LFSLPIATA +LPIP+NPI PSSC ALE F+PV+ SER+ASAA+SRRVSEAVELLD
Subjt:  MNSATARVLIPHLPFPSSSSSSNPNP-KPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLD

Query:  KGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
        KGRELQALGDFN+ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY
Subjt:  KGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHY

Query:  VDISYVKETKHWPPSLISSLQHFLTLS
        VDISYVKETKHWPPSLISSL++FLTLS
Subjt:  VDISYVKETKHWPPSLISSLQHFLTLS

A0A6J1I3T3 uncharacterized protein LOC1114703081.1e-9785.4Show/hide
Query:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDK
        M S TA  LIPHL FPSSS++ NPN KPSKP++  RLPT+RL LFSLPIATA +LPIP+NPI PSSC ALE F+PV+ SER+ASA +SRRVSEAVELLDK
Subjt:  MNSATARVLIPHLPFPSSSSSSNPNPKPSKPLN--RLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFNPVTPSERDASAAVSRRVSEAVELLDK

Query:  GRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV
        GRELQALGDF++ALLYFTQVIDKYKDFAFSDYARVGRA ALYEIG REEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV
Subjt:  GRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLLAENQFTIATLLDPHYV

Query:  DISYVKETKHWPPSLISSLQHFLTLS
        DISYVKETKHWPPSLISSL++FLTLS
Subjt:  DISYVKETKHWPPSLISSLQHFLTLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAAGAAAAAATCACTTTTTGGGAGTACAAAACTCAAAATTGATAAAACTGTGTGAATTTATTATGGAAAATAGGAAAATAAGGCTGAAGTTTTGCCACCAAAACCAAAC
AGACATGAATTCTGCAACTGCAAGAGTTCTGATTCCCCATCTTCCCTTTCCCTCTTCTTCTTCTTCATCAAACCCTAACCCTAAACCTTCAAAACCACTCAATCGATTGC
CGACCCGCCGTTTATTCCTCTTCTCCCTCCCCATAGCCACCGCTTTTGTGCTCCCCATTCCCACCAATCCGATTCTACCGAGTTCTTGCGGTGCTCTCGAGGGATTCAAC
CCTGTCACTCCCTCTGAGAGGGACGCCAGTGCCGCCGTCTCCCGCAGAGTATCAGAGGCCGTGGAGCTTCTCGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAA
TCGTGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCTTTCTCGGACTATGCCCGAGTAGGCAGAGCCTTGGCGCTGTATGAAATTGGTGACCGAG
AAGAAGCAATTGCTGAGATGGAGGATGTTTCCATATCATTGAAGGGATATCCAGAAGTTCATGCCGCACTGGCTGCGGCTTTATACGTGGACAAACACGCTCCGTTGCTC
GCTGAAAATCAGTTCACCATTGCGACTCTGCTTGATCCTCATTACGTGGATATCTCATATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTAGTTCTTTGCAACA
TTTCTTAACGCTTTCT
mRNA sequenceShow/hide mRNA sequence
AAAAGAAAAAATCACTTTTTGGGAGTACAAAACTCAAAATTGATAAAACTGTGTGAATTTATTATGGAAAATAGGAAAATAAGGCTGAAGTTTTGCCACCAAAACCAAAC
AGACATGAATTCTGCAACTGCAAGAGTTCTGATTCCCCATCTTCCCTTTCCCTCTTCTTCTTCTTCATCAAACCCTAACCCTAAACCTTCAAAACCACTCAATCGATTGC
CGACCCGCCGTTTATTCCTCTTCTCCCTCCCCATAGCCACCGCTTTTGTGCTCCCCATTCCCACCAATCCGATTCTACCGAGTTCTTGCGGTGCTCTCGAGGGATTCAAC
CCTGTCACTCCCTCTGAGAGGGACGCCAGTGCCGCCGTCTCCCGCAGAGTATCAGAGGCCGTGGAGCTTCTCGATAAAGGCAGGGAGTTGCAAGCTCTTGGTGATTTCAA
TCGTGCTCTTCTCTACTTCACTCAGGTAATTGATAAATATAAAGATTTTGCTTTCTCGGACTATGCCCGAGTAGGCAGAGCCTTGGCGCTGTATGAAATTGGTGACCGAG
AAGAAGCAATTGCTGAGATGGAGGATGTTTCCATATCATTGAAGGGATATCCAGAAGTTCATGCCGCACTGGCTGCGGCTTTATACGTGGACAAACACGCTCCGTTGCTC
GCTGAAAATCAGTTCACCATTGCGACTCTGCTTGATCCTCATTACGTGGATATCTCATATGTGAAAGAAACAAAGCACTGGCCTCCTAGTTTGATTAGTTCTTTGCAACA
TTTCTTAACGCTTTCT
Protein sequenceShow/hide protein sequence
KRKNHFLGVQNSKLIKLCEFIMENRKIRLKFCHQNQTDMNSATARVLIPHLPFPSSSSSSNPNPKPSKPLNRLPTRRLFLFSLPIATAFVLPIPTNPILPSSCGALEGFN
PVTPSERDASAAVSRRVSEAVELLDKGRELQALGDFNRALLYFTQVIDKYKDFAFSDYARVGRALALYEIGDREEAIAEMEDVSISLKGYPEVHAALAAALYVDKHAPLL
AENQFTIATLLDPHYVDISYVKETKHWPPSLISSLQHFLTLS