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MS004514 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004514
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein Ycf2
Genome locationscaffold1189:270071..270192
RNA-Seq ExpressionMS004514
SyntenyMS004514
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
InterPro domainsIPR008543 - Uncharacterised protein family Ycf2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AXU40388.1 hypothetical chloroplast RF2 [Gomphogyne cissiformis var. villosa]3.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
YP_009439847.1 hypothetical chloroplast RF2 [Gynostemma laxiflorum]3.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
YP_009468904.1 hypothetical chloroplast RF2 [Gynostemma compressum]3.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
YP_009752726.1 Ycf2 protein [Ampelosycios humblotii]3.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
YP_009753047.1 Ycf2 protein [Gerrardanthus macrorhizus]3.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
TrEMBL top hitse value%identityAlignment
A0A191T4A7 Protein Ycf21.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
A0A286QM47 Protein Ycf21.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
A0A291IAJ3 Protein Ycf21.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
A0A346TLZ9 Protein Ycf21.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
A0A6H0EWH7 Protein Ycf21.8e-0970.91Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNHPLPEEIEEFL               SELHLGSNPIERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
SwissProt top hitse value%identityAlignment
A4GYV4 Protein Ycf22.7e-1067.27Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNH LPEEIEEFL               SELHLGSNP ERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
B1A978 Protein Ycf22.7e-1067.27Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNH LPEEIEEFL               SELHLGSNP ERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
Q14F97 Protein Ycf22.7e-1067.27Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNH LPEEIEEFL               SELHLGSNP ERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
Q2L949 Protein Ycf22.7e-1067.27Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNH LPEEIEEFL               SELHLGSNP ERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
Q9B1K6 Protein Ycf22.7e-1067.27Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNH LPEEIEEFL               SELHLGSNP ERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
Arabidopsis top hitse value%identityAlignment
ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core9.6e-1165.45Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNH LPEE EEFL               SELHLGSNP ERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core9.6e-1165.45Show/hide
Query:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV
        MNNH LPEE EEFL               SELHLGSNP ERSTRDQKLLKKEQ+V
Subjt:  MNNHPLPEEIEEFL---------------SELHLGSNPIERSTRDQKLLKKEQEV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATCATCCGCTTCCGGAAGAAATCGAAGAATTTCTCTCAGAACTTCATCTGGGTTCGAATCCTATTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGA
ACAAGAGGTC
mRNA sequenceShow/hide mRNA sequence
ATGAATAATCATCCGCTTCCGGAAGAAATCGAAGAATTTCTCTCAGAACTTCATCTGGGTTCGAATCCTATTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGA
ACAAGAGGTC
Protein sequenceShow/hide protein sequence
MNNHPLPEEIEEFLSELHLGSNPIERSTRDQKLLKKEQEV