CuGenDBv2

Gene ID	MS004544
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Genome location	scaffold995:159614..160009
RNA-Seq Expression	MS004544
Synteny	MS004544
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608059.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.3e-62

90.91

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKCGNHIGNA+TS   S PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLP EVSRC KYEVKIRALQPSSSH+F P VI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

XP_022135315.1 uncharacterized protein At4g08330, chloroplastic [Momordica charantia]

2.6e-70

100

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

XP_022937411.1 uncharacterized protein At4g08330, chloroplastic-like [Cucurbita moschata]

2.3e-63

90.91

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRN STIGSKYGKSIKRGIISFLN+DESRFTQVD+LQCVPHFSKHSWGLF+RR KLLCRKCGNHIGNA+TS  SS PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLP+EVSRCMKYEVKIRALQPSSSH+ GPPVI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

XP_022981061.1 uncharacterized protein At4g08330, chloroplastic [Cucurbita maxima]

7.5e-62

90.15

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKCGNHIGNA+TS   S PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLP EV+RC KYEVKIRALQPSSSH+F P VI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

XP_023523702.1 uncharacterized protein At4g08330, chloroplastic [Cucurbita pepo subsp. pepo]

2.6e-62

90.91

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKCGNHIGNA+TS + S PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLP EVSRC KYEVKIRALQPSSSH+F P VI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C0S6 uncharacterized protein At4g08330, chloroplastic

1.2e-70

100

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

A0A6J1FA98 uncharacterized protein At4g08330, chloroplastic-like

1.1e-63

90.91

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRN STIGSKYGKSIKRGIISFLN+DESRFTQVD+LQCVPHFSKHSWGLF+RR KLLCRKCGNHIGNA+TS  SS PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLP+EVSRCMKYEVKIRALQPSSSH+ GPPVI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

A0A6J1FN39 uncharacterized protein At4g08330, chloroplastic

6.8e-61

89.39

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKC NHIGNA TS   S PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        S P EVSRC KYEVKIRALQPSSSH+F P VI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

A0A6J1II32 uncharacterized protein At4g08330, chloroplastic-like

6.8e-61

88.64

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRN STIGSKYGKSIKRGIISFLN+DESRFTQVD+LQCVPHFSKHSWGLF+RR KLLCRKCGNHIGNA+TS  SS PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLP+EVSRCMKYEVKIRALQPSSSH+    VI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

A0A6J1IVF4 uncharacterized protein At4g08330, chloroplastic

3.6e-62

90.15

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGLFRRR KLLCRKCGNHIGNA+TS   S PLVSDGSDS
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI
        SLP EV+RC KYEVKIRALQPSSSH+F P VI
Subjt:  SLPHEVSRCMKYEVKIRALQPSSSHDFGPPVI

SwissProt top hits

e value

%identity

Alignment

Q9STN5 Uncharacterized protein At4g08330, chloroplastic

2.1e-43

66.13

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCG+CGYELNLSS+NR TSTIGSKYGKS+K GIISF N+DE RF+QVDE QC+PHFS++SWGLFR RTKLLCRKC N+IGNA   +A    LV+  SD 
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSS
        + P  +    KY+++IR+LQPSS+
Subjt:  SLPHEVSRCMKYEVKIRALQPSSS

Arabidopsis top hits

e value

%identity

Alignment

AT4G08330.1 unknown protein

1.5e-44

66.13

Show/hide

Query:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS
        YSCG+CGYELNLSS+NR TSTIGSKYGKS+K GIISF N+DE RF+QVDE QC+PHFS++SWGLFR RTKLLCRKC N+IGNA   +A    LV+  SD 
Subjt:  YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDS

Query:  SLPHEVSRCMKYEVKIRALQPSSS
        + P  +    KY+++IR+LQPSS+
Subjt:  SLPHEVSRCMKYEVKIRALQPSSS

AT4G08330.2 unknown protein.

1.8e-37

62.61

Show/hide

Query:  LNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDSSLPHEVSRC
        +N SS+NR TSTIGSKYGKS+K GIISF N+DE RF+QVDE QC+PHFS++SWGLFR RTKLLCRKC N+IGNA   +A    LV+  SD + P  +   
Subjt:  LNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDSSLPHEVSRC

Query:  MKYEVKIRALQPSSS
         KY+++IR+LQPSS+
Subjt:  MKYEVKIRALQPSSS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TACAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATACATCGACCATTGGCTCTAAATATGGTAAATCAATAAAGCGAGGGATCATATCGTT
TCTAAACGTCGATGAGAGCAGATTTACACAAGTTGATGAACTTCAGTGTGTGCCTCATTTCTCAAAACACTCTTGGGGTCTGTTTCGACGAAGAACCAAACTACTTTGTC
GAAAGTGTGGAAACCATATTGGAAATGCTCACACTAGCCGTGCTTCCTCCATTCCACTTGTTTCAGATGGATCAGATTCATCCCTGCCCCATGAAGTCTCTAGGTGTATG
AAATATGAAGTAAAAATTCGTGCTTTACAACCCTCGTCTTCCCACGATTTTGGTCCCCCAGTTATT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

YSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDESRFTQVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAHTSRASSIPLVSDGSDSSLPHEVSRCM
KYEVKIRALQPSSSHDFGPPVI

MS004544 (gene) of Bitter gourd (TR) v1 genome