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MS004587 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004587
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein decapping 5-like isoform X2
Genome locationscaffold995:508021..508703
RNA-Seq ExpressionMS004587
SyntenyMS004587
Gene Ontology termsNA
InterPro domainsIPR010920 - LSM domain superfamily
IPR025609 - Lsm14-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022138497.1 decapping 5-like protein isoform X1 [Momordica charantia]4.4e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

XP_022138505.1 protein decapping 5-like isoform X2 [Momordica charantia]4.4e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

XP_022138523.1 protein decapping 5-like isoform X4 [Momordica charantia]4.4e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

XP_022138532.1 protein decapping 5-like isoform X5 [Momordica charantia]4.4e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

XP_022138539.1 protein decapping 5-like isoform X6 [Momordica charantia]4.4e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

TrEMBL top hitse value%identityAlignment
A0A6J1C9M0 protein decapping 5-like isoform X22.1e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

A0A6J1CB95 decapping 5-like protein isoform X12.1e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

A0A6J1CBD0 protein decapping 5-like isoform X52.1e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

A0A6J1CD81 protein decapping 5-like isoform X42.1e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

A0A6J1CDA6 protein decapping 5-like isoform X72.1e-3695.18Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

SwissProt top hitse value%identityAlignment
Q3MHF8 Protein LSM14 homolog A4.0e-1661.76Show/hide
Query:  YIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK
        YIGS ISLIS  EIRYEG LY ++ + ST+ L  VRS+GTE R  D P I P D+V++YI+FRGSDIK
Subjt:  YIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK

Q8AVJ2 Protein LSM14 homolog A-B4.0e-1661.76Show/hide
Query:  YIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK
        YIGS ISLIS  EIRYEG LY ++ + ST+ L  VRS+GTE R  D P I P D+V++YI+FRGSDIK
Subjt:  YIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK

Q8ND56 Protein LSM14 homolog A4.0e-1661.76Show/hide
Query:  YIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK
        YIGS ISLIS  EIRYEG LY ++ + ST+ L  VRS+GTE R  D P I P D+V++YI+FRGSDIK
Subjt:  YIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK

Q9C658 Protein decapping 51.2e-2362.65Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        +G  SS+   SY+GS ISL S  EIRYEG LY++N  ES+IGL+NVRS+GTEGR+ DGPQ+ PSDKVY+YI+FRG+DIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

Q9FH77 Decapping 5-like protein6.2e-2571.6Show/hide
Query:  SSSNPVG-SYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        S  N VG ++IGS ISLIS  EIRYEG LYHLN+Q+ST+GLKNVRS GTEGR+ DGPQI P DKVYDYI+FRGSDIK +++
Subjt:  SSSNPVG-SYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

Arabidopsis top hitse value%identityAlignment
AT1G26110.1 decapping 58.3e-2562.65Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        +G  SS+   SY+GS ISL S  EIRYEG LY++N  ES+IGL+NVRS+GTEGR+ DGPQ+ PSDKVY+YI+FRG+DIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

AT1G26110.2 decapping 58.3e-2562.65Show/hide
Query:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        +G  SS+   SY+GS ISL S  EIRYEG LY++N  ES+IGL+NVRS+GTEGR+ DGPQ+ PSDKVY+YI+FRG+DIK +++
Subjt:  SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM

AT4G19360.1 SCD6 protein-related1.3e-1756.94Show/hide
Query:  PVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK
        PV +YIGS ++LI+  +IRYEG L  LN+QEST+GL+NV  YGTEGR  +G QI P  K+ +YI+F G++IK
Subjt:  PVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK

AT4G19360.2 SCD6 protein-related1.3e-1756.94Show/hide
Query:  PVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK
        PV +YIGS ++LI+  +IRYEG L  LN+QEST+GL+NV  YGTEGR  +G QI P  K+ +YI+F G++IK
Subjt:  PVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIK

AT5G45330.1 decapping 5-like4.4e-2671.6Show/hide
Query:  SSSNPVG-SYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM
        S  N VG ++IGS ISLIS  EIRYEG LYHLN+Q+ST+GLKNVRS GTEGR+ DGPQI P DKVYDYI+FRGSDIK +++
Subjt:  SSSNPVG-SYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCCGGATTATCTTCCTCTAATCCCGTGGGATCCTACATTGGGAGCTCGATAAGTCTCATTTCCATGTGCGAGATTCGTTACGAAGGCACACTCTACCACCTCAACATCCA
AGAGTCTACCATCGGTCTGAAGAACGTTAGGTCTTATGGGACAGAAGGACGGCAGATTGATGGTCCTCAGATCCTTCCAAGTGATAAGGTGTATGATTATATTGTGTTTA
GAGGCAGTGACATCAAGGTAATGAAGATG
mRNA sequenceShow/hide mRNA sequence
TCCGGATTATCTTCCTCTAATCCCGTGGGATCCTACATTGGGAGCTCGATAAGTCTCATTTCCATGTGCGAGATTCGTTACGAAGGCACACTCTACCACCTCAACATCCA
AGAGTCTACCATCGGTCTGAAGAACGTTAGGTCTTATGGGACAGAAGGACGGCAGATTGATGGTCCTCAGATCCTTCCAAGTGATAAGGTGTATGATTATATTGTGTTTA
GAGGCAGTGACATCAAGGTAATGAAGATG
Protein sequenceShow/hide protein sequence
SGLSSSNPVGSYIGSSISLISMCEIRYEGTLYHLNIQESTIGLKNVRSYGTEGRQIDGPQILPSDKVYDYIVFRGSDIKVMKM