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MS004610 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004610
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBiogenesis of lysosome-related organelles complex 1 subunit 7
Genome locationscaffold995:670789..671463
RNA-Seq ExpressionMS004610
SyntenyMS004610
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0031083 - BLOC-1 complex (cellular component)
InterPro domainsIPR017246 - Snapin
IPR028119 - Snapin/Pallidin/Snn1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143160.1 uncharacterized protein LOC111013092 [Momordica charantia]8.1e-6293.75Show/hide
Query:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP
        MHSPEGELNQSANQDSNVSVELEHSVSQNGLL+EGNGIANMNLGNADTVAKGLSSML+NIIRDFDSKADDTLKSQSQLSSSLD +    +ELDQLLEDAP
Subjt:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP

Query:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL
        FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL
Subjt:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL

XP_022976873.1 uncharacterized protein LOC111477110 [Cucurbita maxima]5.7e-4777.62Show/hide
Query:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP
        MHSPE  L+  AN+DS+ SVELE S+S+NG L+E N +AN NL N++ +A GLSSML NIIRDFDSKADDTLKSQSQLSSSLD I    TELDQLLEDAP
Subjt:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP

Query:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN
        FPFIMQHASRIS+VRKRVLSLNSILRSIQRR+DNIDRAI+MGN
Subjt:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN

XP_023535159.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo]3.9e-4879.02Show/hide
Query:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP
        MHSPE  L+  AN+DSNVSVELE S+S+NG LQE N +AN NL N++ +A GLSSML NIIRDFDSKADDTLKSQSQLSSSLD I +   ELDQLLEDAP
Subjt:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP

Query:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN
        FPFIMQHASRIS+VRKRVLSLNSILRSIQRR+DNIDRAI+MGN
Subjt:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN

XP_038897517.1 uncharacterized protein LOC120085558 isoform X2 [Benincasa hispida]1.3e-4677.93Show/hide
Query:  MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDA
        MHSPE  + + SAN++SNV  ELE S+S NG LQEGN   N NLGN++ +A GLSSML NIIRDFDSKADDTLKSQSQLSSSLD +    TELDQLLEDA
Subjt:  MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDA

Query:  PFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL
        PFPFIMQHASRISNVRKRVLSLNSILR+IQRRVDNIDRAI+MGNL
Subjt:  PFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL

XP_038897519.1 uncharacterized protein LOC120085558 isoform X4 [Benincasa hispida]1.3e-4677.93Show/hide
Query:  MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDA
        MHSPE  + + SAN++SNV  ELE S+S NG LQEGN   N NLGN++ +A GLSSML NIIRDFDSKADDTLKSQSQLSSSLD +    TELDQLLEDA
Subjt:  MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDA

Query:  PFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL
        PFPFIMQHASRISNVRKRVLSLNSILR+IQRRVDNIDRAI+MGNL
Subjt:  PFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL

TrEMBL top hitse value%identityAlignment
A0A1S3BAU4 Biogenesis of lysosome-related organelles complex 1 subunit 72.0e-4576.55Show/hide
Query:  MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDA
        MH PE  + + SAN+DSNVS ELE S+S  G LQEGN   N NLGN++ +A GLSSML NIIRDFDSKADDTLKSQ+ LSSSLD +    TELDQLLEDA
Subjt:  MHSPEG-ELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDA

Query:  PFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL
        PFPFIMQHASRISNVRKRVLSLNSILR+IQRRVDNIDRAI MGNL
Subjt:  PFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL

A0A6J1CN29 Biogenesis of lysosome-related organelles complex 1 subunit 73.9e-6293.75Show/hide
Query:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP
        MHSPEGELNQSANQDSNVSVELEHSVSQNGLL+EGNGIANMNLGNADTVAKGLSSML+NIIRDFDSKADDTLKSQSQLSSSLD +    +ELDQLLEDAP
Subjt:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP

Query:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL
        FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL
Subjt:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 71.8e-4675.51Show/hide
Query:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLD----LIVLTLTELDQLL
        MHSPE  L+  AN+DS+VSVELE S+S+NG L+E N +AN NL N++ +A GLSSML NIIRDFDSKADDTLKSQSQLSSSLD    +I  T TELDQLL
Subjt:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLD----LIVLTLTELDQLL

Query:  EDAPFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN
        E APFPFIMQHASRIS+VRKRVLSLNSIL SIQRR+DNIDRAI+MGN
Subjt:  EDAPFPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN

A0A6J1FEP4 Biogenesis of lysosome-related organelles complex 1 subunit 75.2e-4676.92Show/hide
Query:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP
        MHSPE  L+  AN+DS+VSVELE S+S+NG L+E N +AN NL N++ +A GLSSML NIIRDFDSKADDTLKSQSQLSSSLD I    TELDQLLE AP
Subjt:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP

Query:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN
        FPFIMQHASRIS+VRKRVLSLNSIL SIQRR+DNIDRAI+MGN
Subjt:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 72.7e-4777.62Show/hide
Query:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP
        MHSPE  L+  AN+DS+ SVELE S+S+NG L+E N +AN NL N++ +A GLSSML NIIRDFDSKADDTLKSQSQLSSSLD I    TELDQLLEDAP
Subjt:  MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAP

Query:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN
        FPFIMQHASRIS+VRKRVLSLNSILRSIQRR+DNIDRAI+MGN
Subjt:  FPFIMQHASRISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G79070.1 SNARE-associated protein-related8.5e-2548.87Show/hide
Query:  LNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQH
        + Q ++ D   S +   S  Q+   ++G        G  + +A+GLS+ML ++I+DFDSKA DTL SQ +LS SLD +V    ELDQLLE+AP PFI+QH
Subjt:  LNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQH

Query:  ASRISNVRKRVLSLNSILRSIQRRVDNIDRAIA
        ASRIS+V++RV SLN +L+S+QRR+DNID  ++
Subjt:  ASRISNVRKRVLSLNSILRSIQRRVDNIDRAIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCAGGAAGGAAATGG
TATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCCATGCTTACCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAA
GCCAGAGCCAGCTTTCATCTTCCCTCGATCTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGG
ATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA
mRNA sequenceShow/hide mRNA sequence
ATGCACAGTCCGGAGGGAGAACTCAATCAATCTGCCAATCAAGACAGCAACGTCTCTGTTGAATTGGAGCATTCAGTTAGTCAAAATGGTCTTCTCCAGGAAGGAAATGG
TATTGCGAATATGAATTTGGGAAACGCTGATACTGTGGCAAAAGGGCTCTCTTCCATGCTTACCAATATCATAAGGGATTTTGACTCCAAAGCTGACGATACTCTTAAAA
GCCAGAGCCAGCTTTCATCTTCCCTCGATCTTATTGTTTTAACTTTAACAGAGCTGGATCAATTACTTGAAGATGCACCTTTTCCATTCATCATGCAGCATGCCTCAAGG
ATTTCTAATGTAAGAAAGAGAGTTTTGTCACTAAATTCCATCTTAAGATCCATACAACGAAGAGTGGATAACATAGATCGGGCTATCGCGATGGGCAATCTA
Protein sequenceShow/hide protein sequence
MHSPEGELNQSANQDSNVSVELEHSVSQNGLLQEGNGIANMNLGNADTVAKGLSSMLTNIIRDFDSKADDTLKSQSQLSSSLDLIVLTLTELDQLLEDAPFPFIMQHASR
ISNVRKRVLSLNSILRSIQRRVDNIDRAIAMGNL