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MS004616 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004616
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAuxin-responsive family protein
Genome locationscaffold995:717922..718365
RNA-Seq ExpressionMS004616
SyntenyMS004616
Gene Ontology termsGO:0009733 - response to auxin (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024703.1 hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-4871.34Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQ-------QQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALI
        M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C   MEE EE E+ ++       +  E+V GSNVI+YVGSTRK+Y ISSK+LSHPL+NALI
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQ-------QQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALI

Query:  DKSK--SKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
        DKSK    ++   +D + ISVRCEVVLFDHLLWMLENSDPNI FDSNLEELA+LYVF
Subjt:  DKSK--SKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

XP_011653970.1 auxin-responsive protein SAUR78 [Cucumis sativus]3.3e-5074.52Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK-
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C      E++EED +QQ  +KV GSNVI+YVGSTRKKY I+SK+LSHPL+NALIDKSKSK 
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK-

Query:  --------SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
                     +D E I VRCEVVLFDHLLWMLENSDPNITFDSNLEELA+LYVF
Subjt:  --------SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

XP_022135446.1 uncharacterized protein LOC111007398 [Momordica charantia]1.2e-7199.33Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM-EEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM EEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM-EEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK

Query:  SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
        SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
Subjt:  SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

XP_023536060.1 auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo]4.6e-5275.82Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQ----LEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKS
        M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C   MEE EE E+H++++     EKV GSNVI+YVGSTRK+Y ISSK+LSHPL+NALIDKS
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQ----LEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKS

Query:  K-SKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
        K  K  ++ +D E ISVRCEVVLFDHLLWMLENSDPNI FDSNLEELA+LYVF
Subjt:  K-SKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

XP_038899559.1 auxin-responsive protein SAUR78 [Benincasa hispida]8.4e-5480.13Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS
        MKKIN LLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +CGTKMEEE+ E+  Q+QQLEKV G++VI+YVGSTRK+Y ISSK+LSHPL+NALIDKSKSK 
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS

Query:  KSKSEDCE---AISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
           ++D E    ISVRCEVVLFDHLLWMLENSDPNI+FDSNLEELA+LYVF
Subjt:  KSKSEDCE---AISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

TrEMBL top hitse value%identityAlignment
A0A1S3B9J9 uncharacterized protein LOC1034876591.7e-4770.62Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRG-SNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW +C      E++EED +QQ  +KV G +NV++YVGSTRKKY I+SK+L HPL+NALIDKSKSK
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRG-SNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK

Query:  -----------SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
                        +D + I VRCEVVLFDHLLWMLENSDPNITFDSNLEELA+LYVF
Subjt:  -----------SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

A0A2C9UHW2 Uncharacterized protein7.7e-3764.43Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS
        MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRED+W   GT    ++E+E+H+             ++VGSTRK+YVI+SK+LSHPLVNALI+KSK K 
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS

Query:  KSKSEDCEAISVRCEVVLFDHLLWMLENSDP-NITFDSNLEELADLYVF
               E + V+CEVVLFDHLLWMLEN+DP N++ DS LEELADLYVF
Subjt:  KSKSEDCEAISVRCEVVLFDHLLWMLENSDP-NITFDSNLEELADLYVF

A0A3N7FTM7 Uncharacterized protein1.7e-3664.19Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS
        MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTREDLW       + ++E E+H+             ++VGSTRK+YVISSK+LSHPLVNALI+KS+ K 
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS

Query:  KSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
            ED   + V+CEVV FDHLLWMLEN+DPN +FDS LEELADLY+F
Subjt:  KSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

A0A6J1C0S4 uncharacterized protein LOC1110073985.6e-7299.33Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM-EEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK
        MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM EEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKM-EEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSK

Query:  SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
        SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
Subjt:  SKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

B9RI47 Uncharacterized protein5.3e-3864.86Show/hide
Query:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS
        MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW       + +EE+E+HQ             ++VGSTRK+YVISSK+LSHPLVNALI KSK + 
Subjt:  MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKS

Query:  KSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
               E + V+CEVVLFDHLLWMLEN+DPN++FDS LEELA+LYVF
Subjt:  KSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

SwissProt top hitse value%identityAlignment
Q29PU2 Auxin-responsive protein SAUR761.1e-0836.89Show/hide
Query:  LRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVI--MYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLW
        ++ KS  + L N   TK  +   + +H +        S  +  +YVG TR+ Y +SS  +SHPL   L   +       SED  +ISV CEVVLF+HLLW
Subjt:  LRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVI--MYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLW

Query:  MLENSDPNITFDSNLEELADLY
        MLEN+D + +   ++ EL + Y
Subjt:  MLENSDPNITFDSNLEELADLY

Q9C9E1 Auxin-responsive protein SAUR782.4e-1141.46Show/hide
Query:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
        ++YVG TR+ Y++    +SHPL   L+D+S S+S  +  +   I V CEVVLF+HLLWML++         ++EELA+ Y +
Subjt:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

Q9LQI6 Auxin-responsive protein SAUR773.7e-1242.53Show/hide
Query:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELADLYVF
        ++YVG +R+ Y++SS  ++HPL   L+D+S S+   +  D E + V CEVVLF+HLLWML+NS     D +     ++EELA+ Y +
Subjt:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELADLYVF

Arabidopsis top hitse value%identityAlignment
AT1G17345.1 SAUR-like auxin-responsive protein family2.6e-1342.53Show/hide
Query:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELADLYVF
        ++YVG +R+ Y++SS  ++HPL   L+D+S S+   +  D E + V CEVVLF+HLLWML+NS     D +     ++EELA+ Y +
Subjt:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENS-----DPNITFDSNLEELADLYVF

AT1G72430.1 SAUR-like auxin-responsive protein family1.7e-1241.46Show/hide
Query:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF
        ++YVG TR+ Y++    +SHPL   L+D+S S+S  +  +   I V CEVVLF+HLLWML++         ++EELA+ Y +
Subjt:  IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF

AT3G12955.1 SAUR-like auxin-responsive protein family4.5e-2143.54Show/hide
Query:  KINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNV-IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSK
        ++  +LR+CKS+S QLGRS SY+SLRSKS R D               +DH Q   +    S    + VG T+K Y+IS K L HPL+NAL++K +   +
Subjt:  KINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNV-IMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSK

Query:  SKSEDCEA-ISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYV
          +ED    I+V+CEVVLFDHLLWMLE  D  +    +L++ A LY+
Subjt:  SKSEDCEA-ISVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYV

AT5G20810.1 SAUR-like auxin-responsive protein family3.8e-0427.08Show/hide
Query:  KMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSN
        K  + +EE     +    V   N+ +YVG   ++++I + +LSH L   L++  K++ +   +   A+++ CEV  F +LL  +EN+  ++  D N
Subjt:  KMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLWMLENSDPNITFDSN

AT5G20820.1 SAUR-like auxin-responsive protein family7.9e-1036.89Show/hide
Query:  LRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVI--MYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLW
        ++ KS  + L N   TK  +   + +H +        S  +  +YVG TR+ Y +SS  +SHPL   L   +       SED  +ISV CEVVLF+HLLW
Subjt:  LRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVI--MYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEVVLFDHLLW

Query:  MLENSDPNITFDSNLEELADLY
        MLEN+D + +   ++ EL + Y
Subjt:  MLENSDPNITFDSNLEELADLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTGTCAAGGCAACTGGGGAGGTCCTCTTCATACAGCAGCCTCAGGTCCAAATCCACAAGAGAAGATCTATG
GAATATTTGTGGAACAAAAATGGAAGAAGAAGAAGAAGAAGAAGATCATCAACAACAACAGCTTGAAAAGGTGAGGGGCAGTAATGTAATTATGTATGTTGGAAGCACAA
GAAAAAAATATGTAATAAGTTCAAAGTTCTTGAGCCACCCTTTGGTAAATGCTCTGATTGATAAATCCAAATCCAAATCCAAATCCAAGTCTGAGGATTGTGAAGCCATT
TCAGTGAGGTGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAACATCACTTTTGATTCTAATTTGGAGGAATTGGCTGATCTCTATGT
CTTT
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTGTCAAGGCAACTGGGGAGGTCCTCTTCATACAGCAGCCTCAGGTCCAAATCCACAAGAGAAGATCTATG
GAATATTTGTGGAACAAAAATGGAAGAAGAAGAAGAAGAAGAAGATCATCAACAACAACAGCTTGAAAAGGTGAGGGGCAGTAATGTAATTATGTATGTTGGAAGCACAA
GAAAAAAATATGTAATAAGTTCAAAGTTCTTGAGCCACCCTTTGGTAAATGCTCTGATTGATAAATCCAAATCCAAATCCAAATCCAAGTCTGAGGATTGTGAAGCCATT
TCAGTGAGGTGTGAAGTTGTTCTGTTTGATCATCTCTTGTGGATGTTGGAAAACTCTGATCCAAACATCACTTTTGATTCTAATTTGGAGGAATTGGCTGATCTCTATGT
CTTT
Protein sequenceShow/hide protein sequence
MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEDHQQQQLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAI
SVRCEVVLFDHLLWMLENSDPNITFDSNLEELADLYVF