CuGenDBv2

Gene ID	MS004642
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold564:132806..134228
RNA-Seq Expression	MS004642
Synteny	MS004642
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]

1.8e-78

36.25

Show/hide

Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIP YT+SCF+LP  L  + H I A F WGS+ +++KIHW +W  L   K +G M FRD+ +FN+A+LAKQ WRIL   NS+++R+L+G+YFK  SF++A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVR--DRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDR
        K+  NPSY WRSIL GR+L +KG RWR+GN  S+ +  D W+ + P   I +S  +    R+ + +  + G W  + VR  F   EA  +L IP+ +   
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVR--DRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDR

Query:  DDTVIWGRDKKSVFSIRSAYHLG-IQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLF
        +D +IW  +K  V+S+RS Y +  +    VQ  +SS+SE     WN FWK  +  KIK+   R+    +P   NL  +G+     C FC ++ E +IHLF
Subjt:  DDTVIWGRDKKSVFSIRSAYHLG-IQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLF

Query:  WDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPS----STVLIQQATNFLSEHFNRHHNDNPA
        W  K  + LW +     L  F I R +           ++ S AD E   +  W +WN RN   F   + +       L++ A  +  E   R    NP 
Subjt:  WDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPS----STVLIQQATNFLSEHFNRHHNDNPA

Query:  RSTIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEA
                  I  +  +   + W PP    +  NTDAS+  + Q  GLG ++ N RG V++A  K +E+ Q V   EA A
Subjt:  RSTIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEA

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]

1.7e-87

67.11

Show/hide

Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIPNYTLSCF+LP ++C+++H IY  F WGS+ ++RKIHW SWK LC RKD G M FRDI+IFNQA+LAKQSWRIL+  +SL+A+ LRGKYFKTGSFL+A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI--SGPFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD
        KLG  PSYAWRSIL GR+LF+KGYRW+VGN  SI L  DPW+   G F P+FT  HVR+  VAWL+  RGRWDE KVR SFI SEAD +LQ PLP  D+D
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI--SGPFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD

Query:  DTVIWGRDKKSVFSIRSAYHLGIQM
        D +IWG DK  +FS+RSAYHLGIQ+
Subjt:  DTVIWGRDKKSVFSIRSAYHLGIQM

XP_024038343.1 uncharacterized protein LOC112097373 [Citrus clementina]

2.6e-72

35.7

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIP Y +S F++P  +C DI  I A F WG     + IHW  W +L   K +G M FRD   FNQA++AKQ WRIL+  +SL+A+IL+ +YF+   F+ A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISGP--FKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD
        +LG NPS+ WRSIL GR++  KG +WR+GN  SI L  + W+  P  FKPI   +   D LVA L+ +   W+E  +   F   +A+ +++I LP+    
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISGP--FKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD

Query:  DTVIWGRDKKSVFSIRSAYHLGIQMA-NVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFW
        D VIW  DKK  +S++S Y + + +    + T+S+ +E+Q   WN  W  ++  KI+I   R  K L+P   NL  + ++ + +C FC K  ET  H   
Subjt:  DTVIWGRDKKSVFSIRSAYHLGIQMA-NVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFW

Query:  DYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFD---NTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARS
          KV +++W       +  F  D       D  + + +     S  D+E  +   W+IWN RNN IFK  +    V + +A   L E F R     PA +
Subjt:  DYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFD---NTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARS

Query:  TIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV
         I D+ +S   K        W PP   Y+  N DA+ +   Q+ GLG V+R+  G+V++A  K+ +    V   EAEA+
Subjt:  TIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV

XP_030498122.1 uncharacterized protein LOC115713779 [Cannabis sativa]

3.2e-75

34.45

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIP Y +SCF+LPATLCH I S+ A F WGST     IHW +W  LC  K QG + FR+   FNQA+LAKQ+WR+L+  NSL++RIL  +YF  GS L A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG-----PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKN
         LG  PS  WRSI+ G+EL  KG RWRVG    I    DPW+ G     PF  I T + ++   VA L+    +WD   V ++F  ++ D++L IPL   
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG-----PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKN

Query:  DRDDTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNS-EHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIH
         + D +IW       +S++S Y+    +A  Q+T SSN+ EH    W++FWK  +  K++I   ++   ++P+ S L  + I     C  C+  +ET  H
Subjt:  DRDDTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNS-EHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIH

Query:  LFWDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARS
          +     KE+W  +SN NL   F    + S +++  ++  +TS  + E  +   W IW  RN     + +   T +   A  +++++ + H   N    
Subjt:  LFWDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARS

Query:  TIKDVITSINPKRNSETNLKWVPPPYWTH--NTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV
         +            + +   W  PP  T+  NTDA++ +T+++ G+G VLR+  G + +A  K +      + +EA A+
Subjt:  TIKDVITSINPKRNSETNLKWVPPPYWTH--NTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV

XP_030508852.1 uncharacterized protein LOC115723496 [Cannabis sativa]

2.6e-77

35.52

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIP Y +SCF+LP TLCH I S+ A F WGST   + IHW +W  LC  K QG + FR+   FNQA+LAKQ+WRIL+  NSL++ +LR +YF  G++L A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG--PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD
         LG NPS  WRS++ G+EL  KG RWRVG+   I    D W+ G   FKP F      + LVA L+ +   WD   + ++F  ++ ++VL IPL     D
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG--PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD

Query:  DTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNS-EHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFW
        D +IW +    V++++S YH  + +A   ++  SNS EH    W+ FWK  + PK++I   ++    +P+ + L  + I     C  C   EET  H  +
Subjt:  DTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNS-EHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFW

Query:  DYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARSTIK
             K +W  LSNF++    I+R   S  D    +  + S+++LE  ++  W IW+ RN +       +   +   A ++L+E F +    N    T  
Subjt:  DYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARSTIK

Query:  DVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEA
           T   P        KW  PP      NTDA+  +     G+G VLRN  G +V+A  K        + +EA
Subjt:  DVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEA

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DAR4 uncharacterized protein LOC111018954

8.9e-79

36.25

Show/hide

Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIP YT+SCF+LP  L  + H I A F WGS+ +++KIHW +W  L   K +G M FRD+ +FN+A+LAKQ WRIL   NS+++R+L+G+YFK  SF++A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVR--DRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDR
        K+  NPSY WRSIL GR+L +KG RWR+GN  S+ +  D W+ + P   I +S  +    R+ + +  + G W  + VR  F   EA  +L IP+ +   
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVR--DRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDR

Query:  DDTVIWGRDKKSVFSIRSAYHLG-IQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLF
        +D +IW  +K  V+S+RS Y +  +    VQ  +SS+SE     WN FWK  +  KIK+   R+    +P   NL  +G+     C FC ++ E +IHLF
Subjt:  DDTVIWGRDKKSVFSIRSAYHLG-IQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLF

Query:  WDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPS----STVLIQQATNFLSEHFNRHHNDNPA
        W  K  + LW +     L  F I R +           ++ S AD E   +  W +WN RN   F   + +       L++ A  +  E   R    NP 
Subjt:  WDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPS----STVLIQQATNFLSEHFNRHHNDNPA

Query:  RSTIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEA
                  I  +  +   + W PP    +  NTDAS+  + Q  GLG ++ N RG V++A  K +E+ Q V   EA A
Subjt:  RSTIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEA

A0A6J1DRA0 uncharacterized protein LOC111022423

8.0e-88

67.11

Show/hide

Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIPNYTLSCF+LP ++C+++H IY  F WGS+ ++RKIHW SWK LC RKD G M FRDI+IFNQA+LAKQSWRIL+  +SL+A+ LRGKYFKTGSFL+A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI--SGPFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD
        KLG  PSYAWRSIL GR+LF+KGYRW+VGN  SI L  DPW+   G F P+FT  HVR+  VAWL+  RGRWDE KVR SFI SEAD +LQ PLP  D+D
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI--SGPFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD

Query:  DTVIWGRDKKSVFSIRSAYHLGIQM
        D +IWG DK  +FS+RSAYHLGIQ+
Subjt:  DTVIWGRDKKSVFSIRSAYHLGIQM

A0A803PV88 Uncharacterized protein

5.8e-70

33.04

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIP+YT+SCF+LPA+ C  I  + A F WGS  K  +IHW SW+ LC+ K  G + FR +   NQA+LAKQ+WR+L    SL+A +L+ KYF    FLKA
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISGPFKPIFTSNHVRD-RLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRDD
        KLG +PSY W S+L GR+L + G  W++GN  S+    DPWI     P   SN +     V + +  +G W+ +K+   F       +L++P+    RDD
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISGPFKPIFTSNHVRD-RLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRDD

Query:  TVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFWDY
        T++W  D   VF+++SAYHL    +     +SSN       W  FW  ++ PK+K    R+   ++P+  NL  +  +    C FC+   ET  H   D 
Subjt:  TVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFWDY

Query:  KVTKELW--GSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARSTIK
            ++W       F L   ++D   + ++      FD  +   L   +   W IWN RN  +F     + T ++     F+S++     N N  +S   
Subjt:  KVTKELW--GSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARSTIK

Query:  DVITSINPKRNSETNLKWVPPPYWTHNTDASWSETHQLGGLGWVLRNWRGDVVS
             I  + + +     VP   +  NTDA+ S      G+G V+++W+G VV+
Subjt:  DVITSINPKRNSETNLKWVPPPYWTHNTDASWSETHQLGGLGWVLRNWRGDVVS

A0A803Q8E0 Uncharacterized protein

5.8e-70

31.63

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        +IP Y +SCF+LP+T C  + S+ A F WGST    KIHW SWK LC  K +G M FR    FN+A+LAKQ+WRI +  NSL++R+L+ +YF   +FL+A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG--PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD
        +LG +PS  W+ I  GREL  +G R+++GN  +++   D WI G   FKP+ + N      V+  + D+  W+   +   F + + D+++ IPL     +
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG--PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD

Query:  DTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFWD
        D +IW       +++ S +HL   +A  Q+T +S+S   S  W  FW   +  K+KI   R+++  +P+ + LV + ++    C  C    E+  H  ++
Subjt:  DTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFWD

Query:  YKVTKELWGSLSNFNLGLFFIDR-GTWSM--DDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRH---------
            +++W          F ID   T +M   DY  ++    S  DLE  +   W IW+ RN VI    S SS  +   A+ +L +++            
Subjt:  YKVTKELWGSLSNFNLGLFFIDR-GTWSM--DDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRH---------

Query:  ---HNDNPARSTIKDVITSINPKRNSETNLKWVPPPY--WTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV
           H  + A + + +  T+   + NS+++  W PP       N DA+ ++  ++ G+G ++R   G VV+A  K V+ C     +EA+A+
Subjt:  ---HNDNPARSTIKDVITSINPKRNSETNLKWVPPPY--WTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV

A0A803QJN9 Uncharacterized protein

1.6e-72

33.54

Show/hide

Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        AIP Y +SCF+LP TLC+ I S+ + F WGST     IHW +W  LC  K  G + FR+  +FNQA+LAKQ+WR+L+  NSL+ R+L  +YF  G+ L A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG--PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD
         LG  PS  WRSI+ G+EL  +G +WRVG   +IT   D W+ G   F P           VA L+    +WD   + ++F  ++ D++L IPL     +
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWISG--PFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRD

Query:  DTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFWD
        D +IW       ++++S Y   + +A+  ETN+S +      W +FWK  +  KI+I   ++    +P+ S L  K I     C  C+ H+ET  H  + 
Subjt:  DTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFWD

Query:  YKVTKELW-GSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRH----HNDNPAR
            K++W  SL  FN    F    + +  D+  ++  NTS+ + E  ++  W IW  RN     + S  +  ++  ATN+L ++ N      HN   A 
Subjt:  YKVTKELW-GSLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRH----HNDNPAR

Query:  STIKDVITSINPKRNSETNLKWVPPPY--WTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV
        ST      +      S T L W  PP      N+DA+ ++     G+G V+R+  G +V+A  K ++ C   + +EA A+
Subjt:  STIKDVITSINPKRNSETNLKWVPPPY--WTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.2e-24

24.57

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        ++P +++S   LP ++ + +  +   F WGST + +K H   W ++C+ K +G +  R     N+A+++K  WR+L++ NSL   +L+ KY   G    +
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGL---NPSYAWRSILCG-RELFEKGYRWRVGNSHSITLDVDPWISGPFKPIFTSNHVR-----DRLVAWLLADRGR-WDEEKVRSSFITSEADQVLQI
        +  +   + S  WRSI  G R++   G  W  G+   I    D W+SG  KP+   ++       D +VA  L   GR WD  K+      +   ++  +
Subjt:  KLGL---NPSYAWRSILCG-RELFEKGYRWRVGNSHSITLDVDPWISGPFKPIFTSNHVR-----DRLVAWLLADRGR-WDEEKVRSSFITSEADQVLQI

Query:  PLP-KNDRDDTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHE
         L       D + W   +   FS+RSAY    +M  V E    N    +  +N  WK  V  ++K     +    +  +     + +    VC  C+   
Subjt:  PLP-KNDRDDTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHE

Query:  ETAIHLFWDYKVTKELWGSL--SNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICS---WVIWNFRNNVIFKRGSPSSTVLIQQATNFLSE---
        E+ +H+  D      +W  +       G F      W  D+    + D +   D+  S I +   W  W +R   IF           +    F+ E   
Subjt:  ETAIHLFWDYKVTKELWGSL--SNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLESSMICS---WVIWNFRNNVIFKRGSPSSTVLIQQATNFLSE---

Query:  HFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPPPY-WTH-NTDASWSETHQLGGLGWVLRNWRG
           R H+ N        V+  I   R  E  + WV P   W   NTD +      L   G VLR+  G
Subjt:  HFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPPPY-WTH-NTDASWSETHQLGGLGWVLRNWRG

P93295 Uncharacterized mitochondrial protein AtMg00310

1.9e-30

43.36

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLC-TRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLK
        A+P Y +SCF+L   LC  + S    F W S    RKI W +W++LC +++D G + FRD+  FNQA+LAKQS+RI+ Q ++L++R+LR +YF   S ++
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLC-TRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLK

Query:  AKLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI
          +G  PSYAWRSI+ GREL  +G    +G+     + +D WI
Subjt:  AKLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI

Arabidopsis top hits

e value

%identity

Alignment

AT3G09510.1 Ribonuclease H-like superfamily protein

4.6e-27

24.62

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Query:  LRGKYFKTGSFLKAKLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVRDRLVAWLLADRGR---WDEEKVRSSFITS
        ++ +YFK  S L AK+    SY W S+L G  L +KG R  +G+  +I + +D  + S P +P+ T    ++  +  L   +G    WD+ K+      S
Subjt:  LRGKYFKTGSFLKAKLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVRDRLVAWLLADRGR---WDEEKVRSSFITS

Query:  EADQVLQIPLPKNDRDDTVIWGRDKKSVFSIRSAYHLGIQ--MANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDG
        +   + +I L K+ + D +IW  +    +++RS Y L       N+   N  +     K   R W   + PK+K    R +   +     L  +G+  D 
Subjt:  EADQVLQIPLPKNDRDDTVIWGRDKKSVFSIRSAYHLGIQ--MANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDG

Query:  VCVFCRKHEETAIHLFWDYKVTKELWG-SLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLES--SMICSWVIWNFRNNVIFK--RGSPSSTVLIQQA
         C  C +  E+  H  +        W  S S+        +    ++ +  N++ D T+ +D      +   W IW  RNNV+F   R SPS TVL  +A
Subjt:  VCVFCRKHEETAIHLFWDYKVTKELWG-SLSNFNLGLFFIDRGTWSMDDYWNWIFDNTSAADLES--SMICSWVIWNFRNNVIFK--RGSPSSTVLIQQA

Query:  TNFLSEHFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV
              +  + H   P+ +           ++ +E  ++W  PP  Y   N DA +         GW++RN  G  +S G   +         E +A+
Subjt:  TNFLSEHFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPPP--YWTHNTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV

AT4G29090.1 Ribonuclease H-like superfamily protein

4.0e-55

27.24

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA
        A+P YT++CF LP T+C  I S+ A F W +  + + +HW +W  L   K +G + F+DI  FN A+L KQ WR+L +  SLMA++ + +YF     L A
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKA

Query:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVRDR---------LVAWLLADRGR-WDEEKVRSSFITSEADQVLQ
         LG  PS+ W+SI   +E+  +G R  VGN   I +    W+ S P         V  +          V+ L+ + GR W ++ +   F   E   + +
Subjt:  KLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI-SGPFKPIFTSNHVRDR---------LVAWLLADRGR-WDEEKVRSSFITSEADQVLQ

Query:  IPLPKNDRDDTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKP-WNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKH
        +        D+  W       ++++S Y +  Q+ N + +    SE    P + + WK+  +PKI+    + +   +P+   L ++ +  +  C+ C   
Subjt:  IPLPKNDRDDTVIWGRDKKSVFSIRSAYHLGIQMANVQETNSSNSEHQSKP-WNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKH

Query:  EETAIHLFWDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWN--WIFD--NTSAADLESSMICSWVIWNF---RNNVIFKRGSPSSTVLIQQATNFLSE
        +ET  HL +     +  W ++S+  + L     G W+   Y N  W+F+  N +    ++S +  W++W     RN ++F+    ++  ++++A + L E
Subjt:  EETAIHLFWDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYWN--WIFD--NTSAADLESSMICSWVIWNF---RNNVIFKRGSPSSTVLIQQATNFLSE

Query:  HFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPPPY-WTH-NTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV
           R   ++              P+ N  +  +W PPP+ W   NTDA+W+  ++  G+GWVLRN +G+V   G + +   + V   E EA+
Subjt:  HFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPPPY-WTH-NTDASWSETHQLGGLGWVLRNWRGDVVSAGCKMVESCQGVKRLEAEAV

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein

4.4e-06

30.19

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Query:  WVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPP--PYWTHNTDASWSETHQLGGLGWVLRNWRG
        W IW   N+++F          ++ A N   E       DN   +  ++   + +P RN+    KW PP       N DAS  E + + GLGW+LRN +G
Subjt:  WVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPP--PYWTHNTDASWSETHQLGGLGWVLRNWRG

Query:  DVVSAG
         V+  G
Subjt:  DVVSAG

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.4e-31

43.36

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Query:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLC-TRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLK
        A+P Y +SCF+L   LC  + S    F W S    RKI W +W++LC +++D G + FRD+  FNQA+LAKQS+RI+ Q ++L++R+LR +YF   S ++
Subjt:  AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLC-TRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLK

Query:  AKLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI
          +G  PSYAWRSI+ GREL  +G    +G+     + +D WI
Subjt:  AKLGLNPSYAWRSILCGRELFEKGYRWRVGNSHSITLDVDPWI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

GCCATCCCTAACTATACCCTCAGTTGTTTTCAACTTCCGGCCACTCTTTGTCATGACATTCACAGTATTTATGCTTGGTTTTGTTGGGGCTCGACCCCTAAAAACCGGAA
AATTCATTGGCATAGTTGGAAAAGACTGTGCACTCGGAAGGATCAAGGAGAAATGAGTTTTAGGGATATTAATATTTTCAATCAGGCTATATTAGCTAAGCAGAGCTGGA
GGATATTGAAACAATCGAATAGCCTCATGGCAAGAATCCTTCGAGGGAAATATTTCAAGACCGGGTCCTTCCTGAAGGCTAAGCTGGGTCTTAATCCATCTTATGCTTGG
AGAAGTATTCTTTGCGGGCGGGAGCTATTTGAGAAAGGGTACCGGTGGAGAGTGGGCAACAGTCATAGCATTACACTTGATGTAGACCCTTGGATTAGTGGCCCTTTTAA
ACCTATTTTTACCTCCAATCATGTGAGGGATCGTCTGGTTGCATGGTTATTAGCTGATAGAGGTAGATGGGATGAGGAGAAGGTTCGGAGTAGCTTCATTACTTCGGAAG
CGGACCAAGTTTTGCAAATCCCTCTTCCTAAAAACGATAGGGATGATACAGTTATATGGGGAAGGGACAAAAAAAGTGTTTTCTCTATTAGAAGTGCCTACCATTTGGGT
ATACAAATGGCCAATGTTCAAGAAACAAATTCTTCTAACTCAGAGCACCAGTCCAAGCCTTGGAATCGGTTTTGGAAAACATCTGTTGCTCCTAAAATTAAGATAGCTTG
CTCGAGGATTGTGAAAATTTTAATTCCTATCAAATCTAATCTTGTTTGGAAAGGAATTGTTACTGATGGTGTGTGTGTTTTTTGCAGGAAGCACGAAGAGACTGCGATTC
ACCTCTTTTGGGACTACAAGGTAACAAAGGAGTTATGGGGTTCTTTATCGAATTTTAATTTGGGGTTATTTTTTATTGACAGGGGCACATGGTCGATGGATGATTATTGG
AACTGGATTTTTGACAATACAAGTGCAGCAGATCTGGAAAGCTCGATGATATGTTCGTGGGTTATCTGGAATTTCCGAAATAATGTGATTTTTAAGCGAGGAAGCCCTAG
TTCTACGGTGTTGATTCAGCAGGCCACAAATTTTTTATCAGAACATTTCAACAGACATCACAACGATAATCCAGCACGGTCAACTATTAAAGATGTCATTACTTCAATTA
ATCCCAAAAGAAATTCAGAGACGAACCTGAAATGGGTTCCTCCTCCATATTGGACGCATAATACAGATGCTTCTTGGTCAGAGACACACCAACTGGGAGGCCTGGGATGG
GTACTGAGAAATTGGAGGGGCGACGTCGTTTCTGCAGGCTGTAAAATGGTGGAGTCTTGCCAGGGAGTGAAGAGATTGGAGGCAGAAGCAGTG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

AIPNYTLSCFQLPATLCHDIHSIYAWFCWGSTPKNRKIHWHSWKRLCTRKDQGEMSFRDINIFNQAILAKQSWRILKQSNSLMARILRGKYFKTGSFLKAKLGLNPSYAW
RSILCGRELFEKGYRWRVGNSHSITLDVDPWISGPFKPIFTSNHVRDRLVAWLLADRGRWDEEKVRSSFITSEADQVLQIPLPKNDRDDTVIWGRDKKSVFSIRSAYHLG
IQMANVQETNSSNSEHQSKPWNRFWKTSVAPKIKIACSRIVKILIPIKSNLVWKGIVTDGVCVFCRKHEETAIHLFWDYKVTKELWGSLSNFNLGLFFIDRGTWSMDDYW
NWIFDNTSAADLESSMICSWVIWNFRNNVIFKRGSPSSTVLIQQATNFLSEHFNRHHNDNPARSTIKDVITSINPKRNSETNLKWVPPPYWTHNTDASWSETHQLGGLGW
VLRNWRGDVVSAGCKMVESCQGVKRLEAEAV

MS004642 (gene) of Bitter gourd (TR) v1 genome