; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004646 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004646
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold564:230531..230773
RNA-Seq ExpressionMS004646
SyntenyMS004646
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149381.1 uncharacterized protein LOC111017811 [Momordica charantia]4.1e-1871.21Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFES
        SS WDVL P +  VPWFS L F GNI KHSFIAWLA+RDRL T DRL  W SS+PVSCVFC  FES
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFES

XP_022157473.1 uncharacterized protein LOC111024165 [Momordica charantia]2.6e-2574.07Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW
        S+  DVL PVR PVPWFSL+ F GNI KHSFIAWLAMRDRL T DRLC W  SV VSCVFC   ES D+LFFE PFSWEVW
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW

XP_022158861.1 uncharacterized protein LOC111025324 [Momordica charantia]1.3e-1961.73Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW
        SSVW +L P R PV +F LL F GNI KHSFI+WLA+RDRL T +RL  W + VP +CVFCA  ESRDHLF + P+S  VW
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]2.6e-1754.88Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        +S W+ + P    V W  LL   GNI KHSF AWLA+RDRL T DRL  W  S+P+SC+ C  ++ESRDHLFF  PF WE+W
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW

XP_031745548.1 uncharacterized protein LOC116405965 [Cucumis sativus]7.6e-1753.66Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        +S W+ + P  + V W  LL   GNI KHSF AWLA+RDRL T DRL  W  S+P+SC+ C  ++ESRDHLFF   F WE+W
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW

TrEMBL top hitse value%identityAlignment
A0A5A7TZS0 Reverse transcriptase domain-containing protein5.9e-1553.66Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        +S W+ + P    V W  LL   GNI KHSF AWLA++DRL T DRL  W SS+P+SC+ C    ESRDHLFF  PF  +VW
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW

A0A5A7UP65 Reverse transcriptase1.3e-1453.66Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        +S W+ + P    V W  LL   GNI KHSF AWLA++DRL T DR   W SSVP+SC+ C    ESRDHLFF  PF  +VW
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW

A0A6J1D875 uncharacterized protein LOC1110178112.0e-1871.21Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFES
        SS WDVL P +  VPWFS L F GNI KHSFIAWLA+RDRL T DRL  W SS+PVSCVFC  FES
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFES

A0A6J1DTG0 uncharacterized protein LOC1110241651.3e-2574.07Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW
        S+  DVL PVR PVPWFSL+ F GNI KHSFIAWLAMRDRL T DRLC W  SV VSCVFC   ES D+LFFE PFSWEVW
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW

A0A6J1E271 uncharacterized protein LOC1110253246.1e-2061.73Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW
        SSVW +L P R PV +F LL F GNI KHSFI+WLA+RDRL T +RL  W + VP +CVFCA  ESRDHLF + P+S  VW
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-1346.05Show/hide
Query:  LWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        L P    VPW+  + F  ++ KH+FI W+   +RL T DRL  W  S+P  C+ C +H ESR HLFFE PF   VW
Subjt:  LWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW

AT1G45063.1 copper ion binding;electron carriers5.5e-0548.89Show/hide
Query:  RDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        R+RL   DR   W   VP  C+ C A  E+R H+FF+ PFS EVW
Subjt:  RDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW

AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.5e-1546.34Show/hide
Query:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        ++ W  L P+   V WF  + F G I KH+FIAW+ MR RL T DR+  W    P  C+FC  H E+R HLFF+  F+ EVW
Subjt:  SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein6.0e-1241.03Show/hide
Query:  WDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHF-ESRDHLFFEYPFSWEV
        W      +L V W+  + F     K+S +AW+A+++RL T DR+  W +    SCV C H  E+RDHLFF  P+S EV
Subjt:  WDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHF-ESRDHLFFEYPFSWEV

AT4G04650.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.7e-1445.57Show/hide
Query:  WDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW
        W  L P    VPW   + F  ++ KH+FI W+   +RL T DRL +W  S+P  C+ C AH +SR HLFFE  FS  VW
Subjt:  WDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFC-AHFESRDHLFFEYPFSWEVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAAGTGTGTGGGATGTGTTGTGGCCGGTTCGGCTTCCTGTTCCTTGGTTCTCTCTACTTTGTTTCGATGGAAACATTCTGAAGCATTCTTTCATTGCTTGGTTGGCGAT
GCGTGATCGACTTGTTACGTGGGATCGCTTATGCCATTGGTATTCTTCCGTTCCTGTTTCCTGTGTGTTTTGTGCTCACTTTGAGTCCCGAGATCATCTGTTCTTTGAGT
ACCCTTTTAGTTGGGAGGTCTGG
mRNA sequenceShow/hide mRNA sequence
TCAAGTGTGTGGGATGTGTTGTGGCCGGTTCGGCTTCCTGTTCCTTGGTTCTCTCTACTTTGTTTCGATGGAAACATTCTGAAGCATTCTTTCATTGCTTGGTTGGCGAT
GCGTGATCGACTTGTTACGTGGGATCGCTTATGCCATTGGTATTCTTCCGTTCCTGTTTCCTGTGTGTTTTGTGCTCACTTTGAGTCCCGAGATCATCTGTTCTTTGAGT
ACCCTTTTAGTTGGGAGGTCTGG
Protein sequenceShow/hide protein sequence
SSVWDVLWPVRLPVPWFSLLCFDGNILKHSFIAWLAMRDRLVTWDRLCHWYSSVPVSCVFCAHFESRDHLFFEYPFSWEVW