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MS004659 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004659
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionATP-dependent RNA helicase DEAH12, chloroplastic-like
Genome locationscaffold564:497553..497666
RNA-Seq ExpressionMS004659
SyntenyMS004659
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045324.1 ATP-dependent RNA helicase DEAH12 [Cucumis melo var. makuwa]8.3e-0673.68Show/hide
Query:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
        S+ +SMVGLWEL L G HDFT ILKP+INL SDVDEL+
Subjt:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
XP_004137287.1 ATP-dependent RNA helicase DEAH12, chloroplastic isoform X1 [Cucumis sativus]3.5e-0475.76Show/hide
Query:  MVGLWELCLYGPHDFTQILKPKINLASDVDELN
        MV LWEL L G HDFT ILKP+INL SDVDEL+
Subjt:  MVGLWELCLYGPHDFTQILKPKINLASDVDELN
XP_008455623.1 PREDICTED: ATP-dependent RNA helicase DEAH12, chloroplastic-like [Cucumis melo]8.3e-0673.68Show/hide
Query:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
        S+ +SMVGLWEL L G HDFT ILKP+INL SDVDEL+
Subjt:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
XP_022136524.1 ATP-dependent RNA helicase DEAH12, chloroplastic-like [Momordica charantia]7.0e-0565.79Show/hide
Query:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
        S+ ++MVG WEL L+G HDFT ILKPKI L SDV+EL+
Subjt:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
TrEMBL top hitse value%identityAlignment
A0A0A0KVR7 Uncharacterized protein1.7e-0475.76Show/hide
Query:  MVGLWELCLYGPHDFTQILKPKINLASDVDELN
        MV LWEL L G HDFT ILKP+INL SDVDEL+
Subjt:  MVGLWELCLYGPHDFTQILKPKINLASDVDELN
A0A1S3C1B4 ATP-dependent RNA helicase DEAH12, chloroplastic-like4.0e-0673.68Show/hide
Query:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
        S+ +SMVGLWEL L G HDFT ILKP+INL SDVDEL+
Subjt:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
A0A5A7TQC6 ATP-dependent RNA helicase DEAH124.0e-0673.68Show/hide
Query:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
        S+ +SMVGLWEL L G HDFT ILKP+INL SDVDEL+
Subjt:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
A0A5D3BD53 ATP-dependent RNA helicase DEAH124.0e-0673.68Show/hide
Query:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
        S+ +SMVGLWEL L G HDFT ILKP+INL SDVDEL+
Subjt:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
A0A6J1C4J5 ATP-dependent RNA helicase DEAH12, chloroplastic-like3.4e-0565.79Show/hide
Query:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
        S+ ++MVG WEL L+G HDFT ILKPKI L SDV+EL+
Subjt:  SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCAAGTGACAAGTCTATGGTAGGGTTATGGGAATTATGCCTCTACGGGCCTCATGATTTCACTCAAATTCTCAAACCCAAGATCAATTTGGCCTCTGATGTTGATGAACT
CAAT
mRNA sequenceShow/hide mRNA sequence
TCAAGTGACAAGTCTATGGTAGGGTTATGGGAATTATGCCTCTACGGGCCTCATGATTTCACTCAAATTCTCAAACCCAAGATCAATTTGGCCTCTGATGTTGATGAACT
CAAT
Protein sequenceShow/hide protein sequence
SSDKSMVGLWELCLYGPHDFTQILKPKINLASDVDELN