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MS004700 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004700
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold741:157609..157798
RNA-Seq ExpressionMS004700
SyntenyMS004700
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAA7019726.1 unnamed protein product [Microthlaspi erraticum]6.9e-1053.97Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I WQ PS   +K N DG++HGNPGL T  G+IRD DG W  GF  N+   TA +AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
KAG7533030.1 Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]2.0e-0950.79Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I W PP   + K N DG++HGNPGL T  G++RD DGNW +GF  N+   +A +AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
KAG7534372.1 Endonuclease/exonuclease/phosphatase superfamily [Arabidopsis thaliana x Arabidopsis arenosa]6.9e-1050.79Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        + W PPS  + K N DG++HGNPGL T  G++RD DG WI+GF  N+   +A +AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
KAG7558418.1 Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa]1.5e-0949.21Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I W PP   ++K N DG++HGNPGL T  G++RD +GNW  GF  N+   +A +AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
XP_010484806.1 PREDICTED: uncharacterized protein LOC104763089 [Camelina sativa]3.1e-1055.56Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I W PPS  + K N DG++HGNPGL T  G++RDSDG WI GF  N+   TA +AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
TrEMBL top hitse value%identityAlignment
A0A2N9EVJ4 RNase H domain-containing protein4.4e-1052.54Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGG
        ++W+PP  N++K N DGS  GNPG  GA GIIRD  GNW+KGF + + +T ++ AEL G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGG
A0A2N9F7H7 Uncharacterized protein9.8e-1052.54Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGG
        ++W+PP  +++K N DGSA GNPGL GA GIIR+  G WIKGF + +  T ++ AEL G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGG
A0A2N9IHI9 Uncharacterized protein4.4e-1052.54Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGG
        ++W+PP  N++K N DGS  GNPG  GA GIIRD  GNW+KGF + + +T ++ AEL G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGG
A0A6D2HYL0 RNase H domain-containing protein3.4e-1053.97Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I WQ PS   +K N DG++HGNPGL T  G+IRD DG W  GF  N+   TA +AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
A0A6D2KT06 RNase H domain-containing protein1.7e-0949.21Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I WQPP   +WK N DG++ GNPGL T  G++RD  G+W+ GF  N+   +A +AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGL-TGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.9e-0844.44Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I W  P   + K N DG++ GNPGL  A G++RD  G W  GF  N+   +A  AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.8e-0944.44Show/hide
Query:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG
        I W  P   + K N DG++ GNPGL  A G++RD +G W  GF  N+   +A  AEL G Y G
Subjt:  IHWQPPSCNYWKSNIDGSAHGNPGLTGA-GIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCCATTGGCAGCCTCCGTCGTGCAATTATTGGAAGTCGAACATCGATGGTTCAGCTCATGGAAACCCAGGTTTGACTGGGGCAGGTATAATTCGAGATTCTGATGGGAA
TTGGATCAAAGGATTTCAGCAAAACGTTGCGCACACAACGGCAATCGTAGCAGAACTTGGGGGATTCTATCTGGGC
mRNA sequenceShow/hide mRNA sequence
ATCCATTGGCAGCCTCCGTCGTGCAATTATTGGAAGTCGAACATCGATGGTTCAGCTCATGGAAACCCAGGTTTGACTGGGGCAGGTATAATTCGAGATTCTGATGGGAA
TTGGATCAAAGGATTTCAGCAAAACGTTGCGCACACAACGGCAATCGTAGCAGAACTTGGGGGATTCTATCTGGGC
Protein sequenceShow/hide protein sequence
IHWQPPSCNYWKSNIDGSAHGNPGLTGAGIIRDSDGNWIKGFQQNVAHTTAIVAELGGFYLG