CuGenDBv2

Gene ID	MS004707
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Genome location	scaffold741:263859..264314
RNA-Seq Expression	MS004707
Synteny	MS004707
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022135945.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]

1.4e-59

78.29

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIK+N ED SRRYR KDIV+DMRR+Y +NI YEKVWRAREV  DLLMGS KKSYT LHKYGEALK V  GT+FNLKLEDDKYFQY FM LGC I GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI SVLVID AHLKGKY+GVI IAS +DGNNQIYPVAF  I+DR+T+N W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

XP_022147768.1 uncharacterized protein LOC111016623 [Momordica charantia]

1.5e-61

80.26

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIK+NFED + RYR KDIVNDMR+NYDINI YEK WRA+EV  DLLMGSPKKSYT L KYGEALK V  GTIFNLKLEDDKYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI SVLVIDGAHLKGKYKGVI IAS +DGNNQIYPVAF  I+D++++N W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

XP_022158254.1 uncharacterized protein LOC111024785 [Momordica charantia]

6.6e-54

78.1

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIKS F+DVSRRY+ KDIVNDMR+NY +NI Y K WR RE   +LLMGSPKKSYT L KYGEALKSV   T+F+LKLEDDKYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYP
        RSCI ++LVIDGAHLKGKYKGVI IAS +DGNNQIYP
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYP

XP_022158318.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Momordica charantia]

4.0e-59

76.97

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        V QIIKS F+DVSRRYR KDIVNDMR+NY +NI YEK WRARE   +LLMGSPKKSYT L KYGEALKSV  GT+F+LKLED+KYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI +VLVIDGAHLKGKYKGVI IAS +DGNNQ+YP+AF  I+DR+TN  W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

XP_022158743.1 PKS-NRPS hybrid synthetase CHGG_01239-like [Momordica charantia]

6.6e-62

80.26

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIK+NFED SRRYR KDIVN+MR+NY +NI YEK WRAREV  DLLMGSPKKSYT L KYGEALKSV  GT FN KLEDDKYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI SVLVIDGAHLKGKYKGVI IASFIDGNNQIYPV F  I+D++++N W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

TrEMBL top hits

e value

%identity

Alignment

A0A6J1C2G8 protein FAR-RED ELONGATED HYPOCOTYL 3-like

6.6e-60

78.29

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIK+N ED SRRYR KDIV+DMRR+Y +NI YEKVWRAREV  DLLMGS KKSYT LHKYGEALK V  GT+FNLKLEDDKYFQY FM LGC I GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI SVLVID AHLKGKY+GVI IAS +DGNNQIYPVAF  I+DR+T+N W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

A0A6J1D278 uncharacterized protein LOC111016623

7.1e-62

80.26

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIK+NFED + RYR KDIVNDMR+NYDINI YEK WRA+EV  DLLMGSPKKSYT L KYGEALK V  GTIFNLKLEDDKYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI SVLVIDGAHLKGKYKGVI IAS +DGNNQIYPVAF  I+D++++N W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

A0A6J1DVR6 protein FAR-RED ELONGATED HYPOCOTYL 3-like

1.9e-59

76.97

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        V QIIKS F+DVSRRYR KDIVNDMR+NY +NI YEK WRARE   +LLMGSPKKSYT L KYGEALKSV  GT+F+LKLED+KYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI +VLVIDGAHLKGKYKGVI IAS +DGNNQ+YP+AF  I+DR+TN  W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

A0A6J1DWY9 PKS-NRPS hybrid synthetase CHGG_01239-like

3.2e-62

80.26

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIK+NFED SRRYR KDIVN+MR+NY +NI YEK WRAREV  DLLMGSPKKSYT L KYGEALKSV  GT FN KLEDDKYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
        RSCI SVLVIDGAHLKGKYKGVI IASFIDGNNQIYPV F  I+D++++N W
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

A0A6J1DYV5 uncharacterized protein LOC111024785

3.2e-54

78.1

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Query:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF
        VGQIIKS F+DVSRRY+ KDIVNDMR+NY +NI Y K WR RE   +LLMGSPKKSYT L KYGEALKSV   T+F+LKLEDDKYFQY FMALGCSI GF
Subjt:  VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGF

Query:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYP
        RSCI ++LVIDGAHLKGKYKGVI IAS +DGNNQIYP
Subjt:  RSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49920.1 MuDR family transposase

6.0e-05

42.11

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Query:  FQYVFMALGCSILGFRSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVI
        F+ +F A   SI GF+ C   ++V+D  +L GKYK  + IAS  D  NQ +P+AF +
Subjt:  FQYVFMALGCSILGFRSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVI

AT1G64255.1 MuDR family transposase

5.1e-04

27.27

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Query:  VGQIIKSNFE--DVSR--RYRLKDIVNDMRRNYDINIWYE----KVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLE-----DDKYFQ
        V +  KS FE  ++ R  RY     ++++++ +   I YE     V  A+E     + G   +S+    K   AL S   G + + K +     +   F 
Subjt:  VGQIIKSNFE--DVSR--RYRLKDIVNDMRRNYDINIWYE----KVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLE-----DDKYFQ

Query:  YVFMALGCSILGFRSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW
         VF A   SI GF+ C   ++V+D  +L  +Y+  + IAS +D  N+ +P+AF +  +  T ++W
Subjt:  YVFMALGCSILGFRSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

AT1G64260.1 MuDR family transposase

3.9e-04

35.38

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Query:  FQYVFMALGCSILGFRSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNN
        F+ VF +   SI GF+ C   ++V+D   L GKY+  + IAS +D  N+ +P+AF +  +  T++
Subjt:  FQYVFMALGCSILGFRSCICSVLVIDGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNN

Sequences

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CDS sequence

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GTGGGTCAGATTATAAAGTCCAACTTCGAGGACGTCAGTCGTCGTTATAGGCTAAAGGATATTGTTAATGACATGCGTAGAAATTATGACATTAACATCTGGTATGAAAA
GGTGTGGCGTGCGAGAGAAGTAGTCTTTGACCTACTGATGGGATCGCCGAAGAAGTCTTATACTTTTTTGCATAAATATGGCGAGGCTTTGAAATCTGTGAAAGCGGGCA
CGATTTTTAATTTGAAGCTAGAGGATGATAAATATTTTCAATATGTGTTCATGGCCCTAGGCTGCTCTATCCTAGGGTTTAGAAGTTGCATATGCTCAGTACTTGTCATT
GATGGTGCACATCTGAAGGGAAAATATAAAGGTGTGATACCTATTGCTTCTTTTATTGATGGTAATAATCAGATATATCCAGTCGCATTTGTAATTATTATAGATAGGAA
AACAAATAACTTATGG

mRNA sequence

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Protein sequence

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VGQIIKSNFEDVSRRYRLKDIVNDMRRNYDINIWYEKVWRAREVVFDLLMGSPKKSYTFLHKYGEALKSVKAGTIFNLKLEDDKYFQYVFMALGCSILGFRSCICSVLVI
DGAHLKGKYKGVIPIASFIDGNNQIYPVAFVIIIDRKTNNLW

MS004707 (gene) of Bitter gourd (TR) v1 genome