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MS004711 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004711
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold741:307388..307591
RNA-Seq ExpressionMS004711
SyntenyMS004711
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG2688924.1 hypothetical protein I3760_09G115800 [Carya illinoinensis]5.3e-1155.17Show/hide
Query:  LKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        +KD +W  +QGWK+   S  G+EVLI+++ QAIP+Y MS F+LPKGFC D+  MFA F
Subjt:  LKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]6.6e-1476Show/hide
Query:  MQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        MQGWK++ FS+GGKEVLI+S+GQAIP+YAMSVFRLPKGFC ++S+MFA F
Subjt:  MQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]2.6e-1050Show/hide
Query:  KTYWSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        + +++Y+KD +WK +QGWK   FS+GGKEVLI+++ QAIP Y MS FRLPK    +   + A F
Subjt:  KTYWSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

XP_040249384.1 uncharacterized protein LOC120966872 [Aegilops tauschii subsp. strangulata]9.0e-1152.46Show/hide
Query:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        + YLKD IWK +QGW +   S+GGKEVLI+S+ QAIP+Y+M+ F+LP+G C  I+     F
Subjt:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

XP_042987152.1 uncharacterized mitochondrial protein AtMg00310-like [Carya illinoinensis]5.3e-1155.17Show/hide
Query:  LKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        +KD +W  +QGWK+   S  G+EVLI+++ QAIP+Y MS F+LPKGFC D+  MFA F
Subjt:  LKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

TrEMBL top hitse value%identityAlignment
A0A2K3MW57 Ribonuclease H (Fragment)1.3e-1046.88Show/hide
Query:  KTYWSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        K  +S++KD +WK ++GWK+ + S  GKEVLI+++ QAIP+Y MS F++P   C +I  M A+F
Subjt:  KTYWSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

A0A2N9GWE9 Uncharacterized protein1.5e-1152.46Show/hide
Query:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        +S +K+ +W+ M GWK+   SMGG+EVLI+++ QAIPSY MS FRLP G C +++ MF++F
Subjt:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

A0A2N9IDC0 Uncharacterized protein1.5e-1152.46Show/hide
Query:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        +S +K+ +W+ M GWK+   SMGG+EVLI+++ QAIPSY MS FRLP G C +++ MF++F
Subjt:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

A0A2N9IT09 Uncharacterized protein4.3e-1150.82Show/hide
Query:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        +S +++ +W+ M GWK+   SMGG+EVLI+++ QAIPSY MS FRLP G C +++ MF++F
Subjt:  WSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

A0A6J1BRN0 uncharacterized protein LOC1110047873.2e-1476Show/hide
Query:  MQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF
        MQGWK++ FS+GGKEVLI+S+GQAIP+YAMSVFRLPKGFC ++S+MFA F
Subjt:  MQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCACCAGAAGGAAAGACTTATTGGAGCTATCTTAAAGACATGATTTGGAAAGCAATGCAAGGTTGGAAAAAAAATAATTTCTCCATGGGAGGAAAAGAAGTCCTCATTAG
AAGTATTGGCCAAGCAATCCCATCATACGCTATGAGTGTGTTTCGCCTCCCAAAAGGATTCTGTTATGATATTTCTCGTATGTTTGCTCACTTT
mRNA sequenceShow/hide mRNA sequence
TCACCAGAAGGAAAGACTTATTGGAGCTATCTTAAAGACATGATTTGGAAAGCAATGCAAGGTTGGAAAAAAAATAATTTCTCCATGGGAGGAAAAGAAGTCCTCATTAG
AAGTATTGGCCAAGCAATCCCATCATACGCTATGAGTGTGTTTCGCCTCCCAAAAGGATTCTGTTATGATATTTCTCGTATGTTTGCTCACTTT
Protein sequenceShow/hide protein sequence
SPEGKTYWSYLKDMIWKAMQGWKKNNFSMGGKEVLIRSIGQAIPSYAMSVFRLPKGFCYDISRMFAHF