; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004756 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004756
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNase H domain-containing protein
Genome locationscaffold176:5496..6002
RNA-Seq ExpressionMS004756
SyntenyMS004756
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKI42247.1 hypothetical protein CRG98_037363 [Punica granatum]3.1e-3644.44Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP
        I W  P  ++ KLNTDG  +G+ G+ GA GI R+S G  + G+  +LG +T  +AELWG+L+GLELAW   CR+L +E+DS +V  +V  Q   +   +P
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP

Query:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISG
          R I  LL ++W+V + H Y E N CADWL+  A +LP+G +V +  P E+L LL+ DI+G
Subjt:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISG

PKI56643.1 hypothetical protein CRG98_022955 [Punica granatum]7.9e-3244.52Show/hide
Query:  KLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQ
        +LNTDG++KGNPG AGA G+ R  DG  + G+  ++G  TA++AELWG+LSGLELAWEL    + +++DS +V +++   +     LR  +R+I   L++
Subjt:  KLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQ

Query:  EWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP
        +W V V H YRE N  ADW+A  + +LP+GLH+ + PP ++  LL  DI G   P
Subjt:  EWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP

PKI65311.1 hypothetical protein CRG98_014275 [Punica granatum]3.5e-3245.57Show/hide
Query:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL
        W  PS  + KLNTDG++KGNP  AGA G+ R  DG  + G+   +G  TA +AELWG+LSGLELAWELG R + +E+DS +V +++         LR  +
Subjt:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL

Query:  RKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADI
        R I   L+++W V V H YRE N  ADW+A  + +L +GLH+ + P  E+  LL  DI
Subjt:  RKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADI

XP_031376896.1 uncharacterized protein LOC116192475 [Punica granatum]8.4e-3442.77Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP
        I+W  P   + K+NTDG+++GNPGIAGA G+ R+ DG+ + G+ HN+G  T+ IAELWG L GL+LAW+ G R + +ELDS++V +++ +       L P
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP

Query:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP
         +  I+ +L ++W + V H YRE N CADW+A  A +  +G H    PP  L  LL  D++G   P
Subjt:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP

XP_031402735.1 uncharacterized protein LOC116212324 [Punica granatum]8.1e-3747.59Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP
        + WN PS  + KLNTDG++KGNPG AGA G+ R  DG     +  N+G  TAV+AELWG+LSGLELAWELG R + +E+DS +V +++         LR 
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP

Query:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP
         +R+I   L+++W V V H YRE N  ADW+A  + +LP+GLH+ + PP E+  LL  DI G   P
Subjt:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP

TrEMBL top hitse value%identityAlignment
A0A2I0IE25 RNase H domain-containing protein1.5e-3644.44Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP
        I W  P  ++ KLNTDG  +G+ G+ GA GI R+S G  + G+  +LG +T  +AELWG+L+GLELAW   CR+L +E+DS +V  +V  Q   +   +P
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP

Query:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISG
          R I  LL ++W+V + H Y E N CADWL+  A +LP+G +V +  P E+L LL+ DI+G
Subjt:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISG

A0A2I0JL30 Uncharacterized protein3.8e-3244.52Show/hide
Query:  KLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQ
        +LNTDG++KGNPG AGA G+ R  DG  + G+  ++G  TA++AELWG+LSGLELAWEL    + +++DS +V +++   +     LR  +R+I   L++
Subjt:  KLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLDQ

Query:  EWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP
        +W V V H YRE N  ADW+A  + +LP+GLH+ + PP ++  LL  DI G   P
Subjt:  EWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP

A0A2I0K9U3 RNase H domain-containing protein1.7e-3245.57Show/hide
Query:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL
        W  PS  + KLNTDG++KGNP  AGA G+ R  DG  + G+   +G  TA +AELWG+LSGLELAWELG R + +E+DS +V +++         LR  +
Subjt:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL

Query:  RKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADI
        R I   L+++W V V H YRE N  ADW+A  + +L +GLH+ + P  E+  LL  DI
Subjt:  RKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADI

A0A6P8C599 uncharacterized protein LOC1161924754.1e-3442.77Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP
        I+W  P   + K+NTDG+++GNPGIAGA G+ R+ DG+ + G+ HN+G  T+ IAELWG L GL+LAW+ G R + +ELDS++V +++ +       L P
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP

Query:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP
         +  I+ +L ++W + V H YRE N CADW+A  A +  +G H    PP  L  LL  D++G   P
Subjt:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP

A0A6P8E5K3 uncharacterized protein LOC1162123243.9e-3747.59Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP
        + WN PS  + KLNTDG++KGNPG AGA G+ R  DG     +  N+G  TAV+AELWG+LSGLELAWELG R + +E+DS +V +++         LR 
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRP

Query:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP
         +R+I   L+++W V V H YRE N  ADW+A  + +LP+GLH+ + PP E+  LL  DI G   P
Subjt:  FLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657508.8e-2637.87Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL
        I W  P   + K+NTDG+++GNPG+A A G+ RD  G    G+  N+G+ +A  AELWG+  GL  AWE    ++ +E+DSE++    K   +  HP + 
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL

Query:  LRPFLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP
        L   +R     L ++W V + H+YRE+N  AD LAN A++L +G H  +  P  +  LL  D  G   P
Subjt:  LRPFLRKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCP

Arabidopsis top hitse value%identityAlignment
AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-1636.44Show/hide
Query:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL
        I W  P   + K+NTDG+++GNPG+A A G+ RD +G    G+  N+G+ +A  AELWG+  GL  AWE    ++ +E+DSE +    K   +  HP + 
Subjt:  IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIV---CKMVHNQKHPTAL

Query:  LRPFLRKITQLLDQEWDV
        L   +R     L ++W +
Subjt:  LRPFLRKITQLLDQEWDV

AT5G51080.1 RNase H family protein1.8e-1335.43Show/hide
Query:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD
        DG++KGNPG++GA  + +  DG+ +   +  LG  T   AE  GL+ GL+ A E G  K+ V+ DS++VC  +  Q K    +L    ++  QL D+   
Subjt:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD

Query:  VSVHHMYRESNFCADWLANNAWNLPIG
          + H+ R  N  AD  AN A  L  G
Subjt:  VSVHHMYRESNFCADWLANNAWNLPIG

AT5G51080.2 RNase H family protein1.8e-1335.43Show/hide
Query:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD
        DG++KGNPG++GA  + +  DG+ +   +  LG  T   AE  GL+ GL+ A E G  K+ V+ DS++VC  +  Q K    +L    ++  QL D+   
Subjt:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD

Query:  VSVHHMYRESNFCADWLANNAWNLPIG
          + H+ R  N  AD  AN A  L  G
Subjt:  VSVHHMYRESNFCADWLANNAWNLPIG

AT5G51080.3 RNase H family protein1.8e-1335.43Show/hide
Query:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD
        DG++KGNPG++GA  + +  DG+ +   +  LG  T   AE  GL+ GL+ A E G  K+ V+ DS++VC  +  Q K    +L    ++  QL D+   
Subjt:  DGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQ-KHPTALLRPFLRKITQLLDQEWD

Query:  VSVHHMYRESNFCADWLANNAWNLPIG
          + H+ R  N  AD  AN A  L  G
Subjt:  VSVHHMYRESNFCADWLANNAWNLPIG

AT5G61090.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-1528.03Show/hide
Query:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL
        W PP     KLN  G++     +  + GI RD  G  V GY         V+A L  +  GL+  W+ G R++H+E  S  +   +  +       +  L
Subjt:  WNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFL

Query:  RKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMAD
             ++ +EW+  ++H+ +E N CA+WLA  +   P  L     PP  L+  L  D
Subjt:  RKITQLLDQEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTAGATGGAACCCTCCTTCGTTTAACTACTGGAAGTTAAACACTGATGGTTCTGCTAAAGGTAATCCAGGGATAGCGGGTGCTGAGGGCATTTTTCGAGATTCTGATGG
TAATAGGGTCAAAGGTTACCAACATAACCTTGGCCAAACAACGGCAGTTATAGCAGAGCTTTGGGGGTTACTATCAGGCCTAGAATTAGCCTGGGAGCTGGGCTGTCGAA
AGCTACACGTTGAATTAGACTCTGAAATTGTTTGCAAAATGGTTCATAATCAAAAGCATCCAACTGCTTTGCTAAGGCCTTTTTTAAGGAAGATCACCCAACTGCTAGAT
CAGGAGTGGGACGTTTCTGTTCATCACATGTATAGGGAATCCAATTTTTGTGCAGATTGGTTAGCTAATAATGCTTGGAATCTCCCCATAGGTCTTCACGTGTGTAATGA
GCCCCCAACCGAGCTTCTCCATCTGTTGATGGCTGACATCTCAGGGCCACCATGCCCCGCCTCATCA
mRNA sequenceShow/hide mRNA sequence
ATTAGATGGAACCCTCCTTCGTTTAACTACTGGAAGTTAAACACTGATGGTTCTGCTAAAGGTAATCCAGGGATAGCGGGTGCTGAGGGCATTTTTCGAGATTCTGATGG
TAATAGGGTCAAAGGTTACCAACATAACCTTGGCCAAACAACGGCAGTTATAGCAGAGCTTTGGGGGTTACTATCAGGCCTAGAATTAGCCTGGGAGCTGGGCTGTCGAA
AGCTACACGTTGAATTAGACTCTGAAATTGTTTGCAAAATGGTTCATAATCAAAAGCATCCAACTGCTTTGCTAAGGCCTTTTTTAAGGAAGATCACCCAACTGCTAGAT
CAGGAGTGGGACGTTTCTGTTCATCACATGTATAGGGAATCCAATTTTTGTGCAGATTGGTTAGCTAATAATGCTTGGAATCTCCCCATAGGTCTTCACGTGTGTAATGA
GCCCCCAACCGAGCTTCTCCATCTGTTGATGGCTGACATCTCAGGGCCACCATGCCCCGCCTCATCA
Protein sequenceShow/hide protein sequence
IRWNPPSFNYWKLNTDGSAKGNPGIAGAEGIFRDSDGNRVKGYQHNLGQTTAVIAELWGLLSGLELAWELGCRKLHVELDSEIVCKMVHNQKHPTALLRPFLRKITQLLD
QEWDVSVHHMYRESNFCADWLANNAWNLPIGLHVCNEPPTELLHLLMADISGPPCPASS