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MS004760 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004760
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationscaffold176:45924..46190
RNA-Seq ExpressionMS004760
SyntenyMS004760
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABA97687.1 retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]5.8e-1035.96Show/hide
Query:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG
        G  +RFW+D WI   PL    P ++++ + K MS+   W     +WN+  RR+L  RE   W +   K+   A+ N RDI+ WK + SG
Subjt:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG

EAZ20332.1 hypothetical protein OsJ_35941 [Oryza sativa Japonica Group]5.8e-1035.96Show/hide
Query:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG
        G  +RFW+D WI   PL    P ++++ + K MS+   W     +WN+  RR+L  RE   W +   K+   A+ N RDI+ WK + SG
Subjt:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG

TYK01352.1 hypothetical protein E5676_scaffold29G00370 [Cucumis melo var. makuwa]6.9e-1139.53Show/hide
Query:  VRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG
        ++FW+D   ++ PLS  FPD+F LS  K   +A+CWC  + +WNLG RRN+ + E    A   E +   A     D L WK + SG
Subjt:  VRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG

XP_022149391.1 uncharacterized protein LOC111017819 [Momordica charantia]2.5e-1343.37Show/hide
Query:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWW
        G ++RFW D W   A L+  FPDL+A+S KK   +ADCW     TW+LGFRR LF+RE   W    E++E   +    D + W
Subjt:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWW

XP_022151325.1 uncharacterized protein LOC111019288 [Momordica charantia]5.3e-1144.59Show/hide
Query:  PLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG
        P  T    LFA+S K    IADCWC    TW+LGFRR LF+RE   W    +++E   IG+  D+  W +DP+G
Subjt:  PLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG

TrEMBL top hitse value%identityAlignment
A0A0V0HST9 Putative ovule protein2.8e-1037.78Show/hide
Query:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGA-AIGNGRDILWWKADPSG
        G +++FW D WID  PLS +FPDLF++ +     + +CW  +   W+L FRR L + E  R A+F  K+ G   + N  D + WK +  G
Subjt:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGA-AIGNGRDILWWKADPSG

A0A5A7VF37 Uncharacterized protein2.8e-1034.83Show/hide
Query:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG
        G ++RFW+D W    PL+  FP+LF+LS      +ADCWC    +WNL  RRN+ + +    A+  E +   A  +  D   W  + +G
Subjt:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG

A0A5D3BRF1 Uncharacterized protein3.3e-1139.53Show/hide
Query:  VRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG
        ++FW+D   ++ PLS  FPD+F LS  K   +A+CWC  + +WNLG RRN+ + E    A   E +   A     D L WK + SG
Subjt:  VRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG

A0A6J1D884 uncharacterized protein LOC1110178191.2e-1343.37Show/hide
Query:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWW
        G ++RFW D W   A L+  FPDL+A+S KK   +ADCW     TW+LGFRR LF+RE   W    E++E   +    D + W
Subjt:  GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWW

A0A6J1DAV1 uncharacterized protein LOC1110192882.6e-1144.59Show/hide
Query:  PLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG
        P  T    LFA+S K    IADCWC    TW+LGFRR LF+RE   W    +++E   IG+  D+  W +DP+G
Subjt:  PLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGTGTCCAAGTCAGATTTTGGGAGGACCCATGGATTGATTCTGCCCCTCTTTCCACCACTTTCCCGGATTTGTTTGCGTTATCCTCCAAGAAAGGTATGTCCATTGCGGA
TTGTTGGTGTGCAGAGGCCTCAACTTGGAATCTCGGTTTCAGAAGAAATCTCTTTGAAAGGGAAACGAGTAGATGGGCAAACTTCACTGAAAAAATAGAAGGTGCAGCTA
TTGGAAATGGAAGAGACATTTTATGGTGGAAAGCGGACCCATCCGGC
mRNA sequenceShow/hide mRNA sequence
GGTGTCCAAGTCAGATTTTGGGAGGACCCATGGATTGATTCTGCCCCTCTTTCCACCACTTTCCCGGATTTGTTTGCGTTATCCTCCAAGAAAGGTATGTCCATTGCGGA
TTGTTGGTGTGCAGAGGCCTCAACTTGGAATCTCGGTTTCAGAAGAAATCTCTTTGAAAGGGAAACGAGTAGATGGGCAAACTTCACTGAAAAAATAGAAGGTGCAGCTA
TTGGAAATGGAAGAGACATTTTATGGTGGAAAGCGGACCCATCCGGC
Protein sequenceShow/hide protein sequence
GVQVRFWEDPWIDSAPLSTTFPDLFALSSKKGMSIADCWCAEASTWNLGFRRNLFERETSRWANFTEKIEGAAIGNGRDILWWKADPSG