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MS004762 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004762
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionzf-RVT domain-containing protein
Genome locationscaffold176:54714..55149
RNA-Seq ExpressionMS004762
SyntenyMS004762
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW19678.1 Structural maintenance of chromosomes protein 3, partial [Vitis vinifera]2.2e-1933.8Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLF +CP  +  W  L  +  + W  P +  D L+  F+G     +  ILW I  + L+W +W ERN R F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEAFLY
             V W+ +  + S WAS  + F    +S +  NW  F +
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEAFLY

RVW25440.1 Preprotein translocase subunit SECY, chloroplastic [Vitis vinifera]7.7e-2034.53Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLF +CP  +  W  L  +  ++W  P +  D L+  F+G     +   LW I  + L+W +W ERNKR F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA
             + W+ ++ F S WAS +  F    +S +  NW A
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA

RVW53981.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.2e-1935.04Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLFF+CP  +  W  L  +  + W  P +  D L+  F+G     +  ILW I  + L+W +W ERN R F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANW
             V W+ +  + S WAS  + F    +S +  NW
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANW

XP_040371876.1 uncharacterized protein LOC112192237 isoform X1 [Rosa chinensis]5.9e-2036.43Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQK  P  C SP WC+LC+N  E   H+F +C   ++ W  L +   + W  P   S+ L +         +A  LW  GV+ + W +W ERN+R F++ 
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  -ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA
          SER   WE V  + S W S +K F +Y +S I  NW+A
Subjt:  -ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA

XP_040371882.1 uncharacterized protein LOC112192237 isoform X2 [Rosa chinensis]5.9e-2036.43Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQK  P  C SP WC+LC+N  E   H+F +C   ++ W  L +   + W  P   S+ L +         +A  LW  GV+ + W +W ERN+R F++ 
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  -ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA
          SER   WE V  + S W S +K F +Y +S I  NW+A
Subjt:  -ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA

TrEMBL top hitse value%identityAlignment
A0A438C911 Structural maintenance of chromosomes protein 3 (Fragment)1.1e-1933.8Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLF +CP  +  W  L  +  + W  P +  D L+  F+G     +  ILW I  + L+W +W ERN R F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEAFLY
             V W+ +  + S WAS  + F    +S +  NW  F +
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEAFLY

A0A438CQF2 Preprotein translocase subunit SECY, chloroplastic3.7e-2034.53Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLF +CP  +  W  L  +  ++W  P +  D L+  F+G     +   LW I  + L+W +W ERNKR F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA
             + W+ ++ F S WAS +  F    +S +  NW A
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEA

A0A438F1Z0 LINE-1 retrotransposable element ORF2 protein1.1e-1935.04Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLFF+CP  +  W  L  +  + W  P +  D L+  F+G     +  ILW I  + L+W +W ERN R F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANW
             V W+ +  + S WAS  + F    +S +  NW
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANW

A0A438FWU5 LINE-1 retrotransposable element ORF2 protein1.8e-1933.58Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLF +CP  +  W+ L K+  + W  P +  D L+  F+G     +   LW +  + LVW +W ERNKR F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANW
               W+ ++ + + WAS +  F    ++ I  NW
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANW

A0A438IJI0 zf-RVT domain-containing protein1.4e-1933.8Show/hide
Query:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        LQ   P   L P WC+LCK + E + HLF +CP  +  W  L  +  + W  P +  D L+  F+G     +  ILW I  + L+W +W ERN R F+D+
Subjt:  LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

Query:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEAFLY
             V W+ +  + S WAS  + F    +S +  NW  F +
Subjt:  ESERRVFWENVIIFVSSWASTNKVF-NYGISQIFANWEAFLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.3e-0428.05Show/hide
Query:  PSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERN
        P+ C+LC + +E  +HLFF CPF  A W   +   N+   FP     + L             ++  +     V+ +W ERN
Subjt:  PSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERN

AT1G45063.1 copper ion binding;electron carriers8.2e-0432.14Show/hide
Query:  PSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKR
        PS C+LC   +E   H+FF+CPF+   WS      N     P    D    L      +  A IL  +     V+ +W ERN R
Subjt:  PSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKR

AT2G02650.1 Ribonuclease H-like superfamily protein2.3e-0631.4Show/hide
Query:  CVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ
        C  C   EE + H+ FNCP+  + W   + I    W  P++  D L +L Q S  +   N L       ++W+LW  RN   FQ +
Subjt:  CVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQ

AT5G18880.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein3.6e-0737.93Show/hide
Query:  PSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFP-NTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCF
        PS  VLC N +E  +HLFF C F+LA W   +  F  S  F    AS ++LQL   SH    +  +  + +   V+ +W ERN R F
Subjt:  PSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFP-NTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTTCAAAAGGTGATGCCTAGTGTGTGCCTCTCCCCCAGCTGGTGTGTCTTGTGCAAGAACAGTGAAGAAGACCTTTCGCACTTGTTTTTTAATTGCCCCTTTGCCTTAGC
TTGTTGGTCGGATCTGTCCAAAATTTTTAATATAAGCTGGTGCTTCCCAAACACAGCCTCTGACTTCCTCCTACAGCTTTTTCAAGGATCTCACTTCAGAGGACAAGCAA
ACATCCTTTGGTCCATTGGGGTAGTTGTTTTGGTTTGGAAATTGTGGTTTGAACGCAACAAGAGGTGTTTCCAGGACCAAGAGTCAGAAAGAAGAGTCTTTTGGGAGAAT
GTTATAATTTTTGTGTCTTCTTGGGCTTCTACTAACAAAGTTTTTAATTATGGTATTTCTCAAATATTTGCCAATTGGGAAGCTTTTTTGTATAATTCCTTG
mRNA sequenceShow/hide mRNA sequence
CTTCAAAAGGTGATGCCTAGTGTGTGCCTCTCCCCCAGCTGGTGTGTCTTGTGCAAGAACAGTGAAGAAGACCTTTCGCACTTGTTTTTTAATTGCCCCTTTGCCTTAGC
TTGTTGGTCGGATCTGTCCAAAATTTTTAATATAAGCTGGTGCTTCCCAAACACAGCCTCTGACTTCCTCCTACAGCTTTTTCAAGGATCTCACTTCAGAGGACAAGCAA
ACATCCTTTGGTCCATTGGGGTAGTTGTTTTGGTTTGGAAATTGTGGTTTGAACGCAACAAGAGGTGTTTCCAGGACCAAGAGTCAGAAAGAAGAGTCTTTTGGGAGAAT
GTTATAATTTTTGTGTCTTCTTGGGCTTCTACTAACAAAGTTTTTAATTATGGTATTTCTCAAATATTTGCCAATTGGGAAGCTTTTTTGTATAATTCCTTG
Protein sequenceShow/hide protein sequence
LQKVMPSVCLSPSWCVLCKNSEEDLSHLFFNCPFALACWSDLSKIFNISWCFPNTASDFLLQLFQGSHFRGQANILWSIGVVVLVWKLWFERNKRCFQDQESERRVFWEN
VIIFVSSWASTNKVFNYGISQIFANWEAFLYNSL