; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004768 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004768
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPathogenic type III effector avirulence factor Avr cleavage site
Genome locationscaffold176:119210..120311
RNA-Seq ExpressionMS004768
SyntenyMS004768
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO49336.1 Pathogenic type III effector avirulence factor Avr cleavage site [Corchorus olitorius]3.8e-3162.02Show/hide
Query:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT
        D YYRR+++P+FG+WDWN+ LPFTQCF+S+  A      + YSE RDLYVAGDLY NDVVTPAMIVVPR  TK R   ++EGKK++    E   V++ AT
Subjt:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT

Query:  T---KPKPKPVDEDLYKISPHLLSAKPKK
        T   +P PKPVDEDLYKISP LL AKPKK
Subjt:  T---KPKPKPVDEDLYKISPHLLSAKPKK
XP_004150335.2 uncharacterized protein LOC101219200 [Cucumis sativus]2.7e-3262.7Show/hide
Query:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT
        +DYYYRRNYIPSFGNW+WNDHLPF+ CF+SS  A       G+    DLYVAGDLY NDVVTPAMIVVPR   KR RQ ++ KKE    + +  +    +
Subjt:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT

Query:  TKPKPKPVDEDLYKISPHLLSAKPKK
        TKP PKPVDEDLYKISP LL+AK KK
Subjt:  TKPKPKPVDEDLYKISPHLLSAKPKK
XP_021274321.1 uncharacterized protein LOC110409336 [Herrania umbratica]7.2e-3060.77Show/hide
Query:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT
        D YYRR+++P+FG+WDWN+ LPFTQCF+S+  A      + YSE RDLYVAGDLY NDVVTPAMIVVPR  TK R   V+EGKK+     E + V++ A+
Subjt:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT

Query:  TKP----KPKPVDEDLYKISPHLLSAKPKK
          P     PKPVDEDLYKISP LL AKPKK
Subjt:  TKP----KPKPVDEDLYKISPHLLSAKPKK
XP_022156085.1 uncharacterized protein LOC111023056 [Momordica charantia]6.9e-6599.21Show/hide
Query:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT
        +DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT
Subjt:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT

Query:  TKPKPKPVDEDLYKISPHLLSAKPKK
        TKPKPKPVDEDLYKISPHLLSAKPKK
Subjt:  TKPKPKPVDEDLYKISPHLLSAKPKK
XP_038899118.1 uncharacterized protein LOC120086508 [Benincasa hispida]9.8e-3564.34Show/hide
Query:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKET---DTETETATVQQ
        +DYYYRRNYIPSFGNW+WNDHLPF+ CFDSS  A       GY    DLYVAGDLY NDVVTPAMIVVPR   KR RQ ++G+KE    +TE+    +  
Subjt:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKET---DTETETATVQQ

Query:  KATTKPKPKPVDEDLYKISPHLLSAKPKK
           TKP PKPVDEDLYKISP LL+AK KK
Subjt:  KATTKPKPKPVDEDLYKISPHLLSAKPKK
TrEMBL top hitse value%identityAlignment
A0A061DMX9 Uncharacterized protein4.6e-3060Show/hide
Query:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT
        D +YRR+++P+FG+WDWN+ LPFTQCF+S+  A      + YSE RDLYVAGDLY NDVVTPAMIVVPR  TK R   V+EGKK+     E + V++ A+
Subjt:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT

Query:  ----TKPKPKPVDEDLYKISPHLLSAKPKK
             +P PKPVDEDLYKISP LL AKPKK
Subjt:  ----TKPKPKPVDEDLYKISPHLLSAKPKK
A0A0A0KA54 Uncharacterized protein1.3e-3262.7Show/hide
Query:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT
        +DYYYRRNYIPSFGNW+WNDHLPF+ CF+SS  A       G+    DLYVAGDLY NDVVTPAMIVVPR   KR RQ ++ KKE    + +  +    +
Subjt:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT

Query:  TKPKPKPVDEDLYKISPHLLSAKPKK
        TKP PKPVDEDLYKISP LL+AK KK
Subjt:  TKPKPKPVDEDLYKISPHLLSAKPKK
A0A1R3FU95 Pathogenic type III effector avirulence factor Avr cleavage site1.9e-3162.02Show/hide
Query:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT
        D YYRR+++P+FG+WDWN+ LPFTQCF+S+  A      + YSE RDLYVAGDLY NDVVTPAMIVVPR  TK R   ++EGKK++    E   V++ AT
Subjt:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT

Query:  T---KPKPKPVDEDLYKISPHLLSAKPKK
        T   +P PKPVDEDLYKISP LL AKPKK
Subjt:  T---KPKPKPVDEDLYKISPHLLSAKPKK
A0A6J0ZHG7 uncharacterized protein LOC1104093363.5e-3060.77Show/hide
Query:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT
        D YYRR+++P+FG+WDWN+ LPFTQCF+S+  A      + YSE RDLYVAGDLY NDVVTPAMIVVPR  TK R   V+EGKK+     E + V++ A+
Subjt:  DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTK-RHRQVREGKKETDTETETATVQQKAT

Query:  TKP----KPKPVDEDLYKISPHLLSAKPKK
          P     PKPVDEDLYKISP LL AKPKK
Subjt:  TKP----KPKPVDEDLYKISPHLLSAKPKK
A0A6J1DPB1 uncharacterized protein LOC1110230563.4e-6599.21Show/hide
Query:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT
        +DYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT
Subjt:  QDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKAT

Query:  TKPKPKPVDEDLYKISPHLLSAKPKK
        TKPKPKPVDEDLYKISPHLLSAKPKK
Subjt:  TKPKPKPVDEDLYKISPHLLSAKPKK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G48500.1 unknown protein1.2e-2242.75Show/hide
Query:  YYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAH-GYSEVRDLYVAGDLYHN-DVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKATT
        Y RR ++P+FG+WDWND +PFTQCF+++TT   A   +  Y + RDLY+AGDLY N  +V PA+I+VPR   K  ++  E K+    +      + +   
Subjt:  YYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAH-GYSEVRDLYVAGDLYHN-DVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKATT

Query:  KP-------------KPKPVDEDLYKISPHLLSAKPKK
         P              PKPVDEDLYK+SP LLS K K+
Subjt:  KP-------------KPKPVDEDLYKISPHLLSAKPKK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCACAGGATTACTACTACCGCAGAAACTACATTCCCTCCTTCGGCAACTGGGACTGGAACGACCACCTTCCTTTCACCCAGTGCTTCGACTCCTCCACAACCGCCGCTTA
CGCCGGCGCCGCCCATGGCTACTCCGAGGTTCGCGACTTGTACGTCGCCGGCGATTTGTATCACAACGACGTCGTCACCCCCGCCATGATCGTCGTCCCTCGCTCCACGA
CGAAGCGTCACAGGCAGGTGAGGGAAGGGAAGAAGGAAACAGATACAGAGACTGAAACTGCAACAGTGCAGCAAAAGGCAACGACCAAACCCAAGCCCAAGCCAGTTGAC
GAAGACCTCTACAAAATCTCACCTCACCTTCTCTCTGCCAAGCCCAAAAAG
mRNA sequenceShow/hide mRNA sequence
TCACAGGATTACTACTACCGCAGAAACTACATTCCCTCCTTCGGCAACTGGGACTGGAACGACCACCTTCCTTTCACCCAGTGCTTCGACTCCTCCACAACCGCCGCTTA
CGCCGGCGCCGCCCATGGCTACTCCGAGGTTCGCGACTTGTACGTCGCCGGCGATTTGTATCACAACGACGTCGTCACCCCCGCCATGATCGTCGTCCCTCGCTCCACGA
CGAAGCGTCACAGGCAGGTGAGGGAAGGGAAGAAGGAAACAGATACAGAGACTGAAACTGCAACAGTGCAGCAAAAGGCAACGACCAAACCCAAGCCCAAGCCAGTTGAC
GAAGACCTCTACAAAATCTCACCTCACCTTCTCTCTGCCAAGCCCAAAAAG
Protein sequenceShow/hide protein sequence
SQDYYYRRNYIPSFGNWDWNDHLPFTQCFDSSTTAAYAGAAHGYSEVRDLYVAGDLYHNDVVTPAMIVVPRSTTKRHRQVREGKKETDTETETATVQQKATTKPKPKPVD
EDLYKISPHLLSAKPKK