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MS004772 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004772
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold176:184467..184739
RNA-Seq ExpressionMS004772
SyntenyMS004772
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021716699.1 uncharacterized protein LOC110684567 isoform X1 [Chenopodium quinoa]5.2e-0637.5Show/hide
Query:  WRPPLSVSLKLNTDAAC-RGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRN
        W PP + S K+NTDA C RG     G ++RD   ++        P    P +AE R +LEG+K   ++   +L VESD L  IQ +R+
Subjt:  WRPPLSVSLKLNTDAAC-RGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRN

XP_022131661.1 uncharacterized protein LOC111004786 [Momordica charantia]2.0e-1350Show/hide
Query:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE
        W PP   ++K+N+DAACR  ST  G IIRD    L+ A S+ +P PL+PL AEIR ILE LK  A+ ++T L VESD   AI+L++ +
Subjt:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.3e-3692.31Show/hide
Query:  IQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE
        +QYWRP  SVSLKLNTDAACRGASTSFGCIIRDSS SLVAATSI VPFPLSPLLAEIRCILEGLKF AA NFTHLEVESDSLLAIQLIRNE
Subjt:  IQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE

XP_038690886.1 uncharacterized protein LOC119989439 [Tripterygium wilfordii]3.3e-0842.35Show/hide
Query:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLI
        WRPP    +K+N DAA R +    G I RD+  + +A+ SICVP PL+PL AE     E L F  + N   + +E DSLL I+ +
Subjt:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLI

XP_038722072.1 uncharacterized protein LOC120014227 [Tripterygium wilfordii]3.0e-0943.82Show/hide
Query:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQ-LIRNE
        WRPP +  +K+N DAA R +    G I RD+  + +A+ +ICVP PL+PL AE     E L F  + N+  + +E DSLL I+ L RNE
Subjt:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQ-LIRNE

TrEMBL top hitse value%identityAlignment
A0A6J1BQ49 uncharacterized protein LOC1110047869.6e-1450Show/hide
Query:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE
        W PP   ++K+N+DAACR  ST  G IIRD    L+ A S+ +P PL+PL AEIR ILE LK  A+ ++T L VESD   AI+L++ +
Subjt:  WRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE

A0A6J1DX30 uncharacterized protein LOC1110248746.2e-3792.31Show/hide
Query:  IQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE
        +QYWRP  SVSLKLNTDAACRGASTSFGCIIRDSS SLVAATSI VPFPLSPLLAEIRCILEGLKF AA NFTHLEVESDSLLAIQLIRNE
Subjt:  IQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE

A0A6J5X9C6 Uncharacterized protein1.3e-0537.23Show/hide
Query:  WRPPLSVSLKLNTDAA------CRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE
        WRPP     KLN D A       RGA    G I+RDS   LV A ++  P  +S L  E+  +  G+ F    +   LE+ESDSL A+ ++ +E
Subjt:  WRPPLSVSLKLNTDAA------CRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE

A0A803QFT1 Uncharacterized protein5.6e-0637.36Show/hide
Query:  QYWRPPLSVSLKLNTDAACRGAST--SFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRN
        ++W+ P   ++K+NTD A   ++T  S+ C+ RD +  LV A + C    + P +AE   ILE L ++    +  +EVESD L+AIQ IR+
Subjt:  QYWRPPLSVSLKLNTDAACRGAST--SFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRN

A0A803QN60 Uncharacterized protein3.3e-0639.56Show/hide
Query:  QYWRPPLSVSLKLNTDAAC--RGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRN
        + W  P SV +KLN DAA   R +   FGC++R++   L+AA +   P  +SP LAEI  I+E L ++   ++T   VE+DSL+  + IR+
Subjt:  QYWRPPLSVSLKLNTDAAC--RGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTCAATATTGGCGCCCCCCATTGAGTGTCTCTCTAAAATTAAACACTGATGCGGCATGTAGGGGTGCATCCACGAGCTTCGGCTGCATCATAAGAGACTCTTCTGATTC
TCTGGTTGCCGCGACTTCAATTTGTGTTCCATTTCCGTTGTCGCCTCTTCTTGCAGAAATCAGATGCATCTTGGAGGGTCTGAAGTTTGTGGCGGCTTTCAATTTCACCC
ATTTAGAAGTTGAATCTGATTCTTTGTTGGCAATTCAGCTGATTCGAAATGAG
mRNA sequenceShow/hide mRNA sequence
ATTCAATATTGGCGCCCCCCATTGAGTGTCTCTCTAAAATTAAACACTGATGCGGCATGTAGGGGTGCATCCACGAGCTTCGGCTGCATCATAAGAGACTCTTCTGATTC
TCTGGTTGCCGCGACTTCAATTTGTGTTCCATTTCCGTTGTCGCCTCTTCTTGCAGAAATCAGATGCATCTTGGAGGGTCTGAAGTTTGTGGCGGCTTTCAATTTCACCC
ATTTAGAAGTTGAATCTGATTCTTTGTTGGCAATTCAGCTGATTCGAAATGAG
Protein sequenceShow/hide protein sequence
IQYWRPPLSVSLKLNTDAACRGASTSFGCIIRDSSDSLVAATSICVPFPLSPLLAEIRCILEGLKFVAAFNFTHLEVESDSLLAIQLIRNE