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MS004773 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004773
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationscaffold176:187103..187519
RNA-Seq ExpressionMS004773
SyntenyMS004773
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]4.2e-1538.24Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W PP      +N DA+  + ++ +GLG V+R+++GE+I    K   N  +++  EA+AVL GLQ A+  + T  I VE D+  V+ L+N +   LTEI W
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAV
        V+ DIL  K          V+R  N+ AHSLA++A+
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAV

XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]2.1e-1440.62Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLT
        W  PP + W LN+DASWS+  +  G+GW+L D RGE++L GN  +     I  +E   ++ GLQ  ++     PI +E D+ EV+ L+ +ED DLT
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLT

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.1e-1836.96Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W PP  ++W LN++A+W     T G+GW+LRD +GEVI    +++    +I  +E  A+  GL+ A+  +   PI +E D+ E ++LL+R+ +D TEI W
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH
        ++++I  +     + S   ++REAN  AH LAR A+E+
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.9e-3146.67Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W PPP+H W+LN+DASWSD+    G+GW++R W G+++L GN+ V+  +++K +EA A+L GL+   +     P+ +E D+ EV +LLNR+ EDLT+  W
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIA
        VV++IL L+  C + +F  V RE N CAHSLA+ A
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.4e-1836.55Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALS--CDPTY-----PIRVEMDATEVVNLLNREDE
        W PP  ++W LN+DA+W     T G+GW+LRD +GEVI    +++    +I  +E  A+  GL+      C P       PI +E D+ E ++LL+R+ +
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALS--CDPTY-----PIRVEMDATEVVNLLNREDE

Query:  DLTEIRWVVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH
        D TEI W++++I  +     + S   ++REAN  AH LAR A+E+
Subjt:  DLTEIRWVVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH

TrEMBL top hitse value%identityAlignment
A0A6J1CIF1 uncharacterized protein LOC1110112379.5e-1335.29Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W+PP    + +N+DAS+  + Q +GLG ++R+ RG+V+    K ++N  S+   EA   + GLQ A S     P+ +E D++ + NL ++  EDL+E   
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAV
        +V        Q    SF +V RE N  AH LAR A+
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAV

A0A6J1CP26 uncharacterized protein LOC1110134125.2e-1936.96Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W PP  ++W LN++A+W     T G+GW+LRD +GEVI    +++    +I  +E  A+  GL+ A+  +   PI +E D+ E ++LL+R+ +D TEI W
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH
        ++++I  +     + S   ++REAN  AH LAR A+E+
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH

A0A6J1CQG0 uncharacterized protein LOC1110132161.0e-1440.62Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLT
        W  PP + W LN+DASWS+  +  G+GW+L D RGE++L GN  +     I  +E   ++ GLQ  ++     PI +E D+ EV+ L+ +ED DLT
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLT

A0A6J1DNV9 uncharacterized protein LOC1110224039.1e-3246.67Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W PPP+H W+LN+DASWSD+    G+GW++R W G+++L GN+ V+  +++K +EA A+L GL+   +     P+ +E D+ EV +LLNR+ EDLT+  W
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIA
        VV++IL L+  C + +F  V RE N CAHSLA+ A
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIA

A0A6J1DSV1 uncharacterized protein LOC1110236086.8e-1936.55Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALS--CDPTY-----PIRVEMDATEVVNLLNREDE
        W PP  ++W LN+DA+W     T G+GW+LRD +GEVI    +++    +I  +E  A+  GL+      C P       PI +E D+ E ++LL+R+ +
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALS--CDPTY-----PIRVEMDATEVVNLLNREDE

Query:  DLTEIRWVVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH
        D TEI W++++I  +     + S   ++REAN  AH LAR A+E+
Subjt:  DLTEIRWVVKDILILKAQCGVHSFVWVNREANICAHSLARIAVEH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G52990.1 thioredoxin family protein3.6e-0426.19Show/hide
Query:  NSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRWVVKDILILKAQ
        N DAS  +    SGLGW++R+ +G V+  G        + ++ E  A++  +Q   +   T  I  E D + V  L+N +  D   ++  +  I      
Subjt:  NSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRWVVKDILILKAQ

Query:  CGVHSFVWVNREANICAHSLARIAVE
             F++ +RE N CA +L + A++
Subjt:  CGVHSFVWVNREANICAHSLARIAVE

AT2G02650.1 Ribonuclease H-like superfamily protein4.5e-0728.03Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W PPP      N D+ ++     +  GW +R+  G ++L GN  + + +     EA   L+ LQ   +    Y +  E D+  +V L+N   ED + +  
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLA
        ++ DI     +    S  +VNRE N  A +LA
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLA

AT4G29090.1 Ribonuclease H-like superfamily protein4.7e-1232.09Show/hide
Query:  WVPPPLHTW-SLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIR
        W PPP H W   N+DA+W+  ++  G+GWVLR+ +GEV   G + +    S+ + E EA+   +         Y I  E D+  ++ +LN  DE    ++
Subjt:  WVPPPLHTW-SLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIR

Query:  WVVKDILILKAQCGVHSFVWVNREANICAHSLAR
          ++D+  L +Q     FV++ RE N  A  +AR
Subjt:  WVVKDILILKAQCGVHSFVWVNREANICAHSLAR

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.2e-0424.82Show/hide
Query:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW
        W PP       N DAS  + +  SGLGW+LR+ +G VI  G        + ++ E   ++  +Q +        I  E D   +  ++N +  +   ++ 
Subjt:  WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRW

Query:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAVE
         +  I           F + +RE N CA  LA+ A++
Subjt:  VVKDILILKAQCGVHSFVWVNREANICAHSLARIAVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGGTTCCTCCTCCATTACATACCTGGTCCTTAAACTCTGACGCCTCTTGGTCGGACACACACCAGACTAGCGGATTAGGATGGGTTTTGCGAGATTGGAGGGGAGAAGT
CATCCTCGGCGGCAACAAAGTGGTGGATAATTTCAGTAGCATAAAGAAGATGGAGGCAGAAGCAGTCCTCAACGGTCTTCAATGTGCGCTTTCGTGTGACCCAACCTACC
CGATTAGAGTGGAAATGGACGCAACAGAGGTGGTGAATCTCTTGAATAGGGAAGATGAAGATCTCACCGAAATACGGTGGGTTGTGAAGGACATTCTGATTTTGAAAGCC
CAGTGTGGGGTCCACTCGTTTGTTTGGGTGAATAGGGAAGCTAATATTTGCGCTCATTCATTGGCTCGTATAGCGGTGGAACATAAA
mRNA sequenceShow/hide mRNA sequence
TGGGTTCCTCCTCCATTACATACCTGGTCCTTAAACTCTGACGCCTCTTGGTCGGACACACACCAGACTAGCGGATTAGGATGGGTTTTGCGAGATTGGAGGGGAGAAGT
CATCCTCGGCGGCAACAAAGTGGTGGATAATTTCAGTAGCATAAAGAAGATGGAGGCAGAAGCAGTCCTCAACGGTCTTCAATGTGCGCTTTCGTGTGACCCAACCTACC
CGATTAGAGTGGAAATGGACGCAACAGAGGTGGTGAATCTCTTGAATAGGGAAGATGAAGATCTCACCGAAATACGGTGGGTTGTGAAGGACATTCTGATTTTGAAAGCC
CAGTGTGGGGTCCACTCGTTTGTTTGGGTGAATAGGGAAGCTAATATTTGCGCTCATTCATTGGCTCGTATAGCGGTGGAACATAAA
Protein sequenceShow/hide protein sequence
WVPPPLHTWSLNSDASWSDTHQTSGLGWVLRDWRGEVILGGNKVVDNFSSIKKMEAEAVLNGLQCALSCDPTYPIRVEMDATEVVNLLNREDEDLTEIRWVVKDILILKA
QCGVHSFVWVNREANICAHSLARIAVEHK