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MS004778 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004778
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationscaffold176:215766..216000
RNA-Seq ExpressionMS004778
SyntenyMS004778
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022150382.1 uncharacterized protein LOC111018559 [Momordica charantia]4.0e-1558.23Show/hide
Query:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        +  ADKF+KD K +  HLLNHMNNSLFD FV +   +  +D LE RYGGDDA R+KYV+ K +QFQM+D+K +  QVHE
Subjt:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

XP_022152111.1 uncharacterized protein LOC111019900 [Momordica charantia]5.0e-1864.56Show/hide
Query:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        +++ADKFEKD K + GHLLNHMNNSLF LFVVQ   +  +DM E RYGGDDA RRKYV+ K ++FQMSD++ V +QVHE
Subjt:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

XP_022153695.1 uncharacterized protein LOC111021147 [Momordica charantia]1.9e-1766.67Show/hide
Query:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        ++ADKFEKD K + GHLLNHMN+ LFDLFVVQ   +  +D LE RYGGDDA RRKYV+ K +QFQMSD+K V  QVHE
Subjt:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

XP_022158735.1 uncharacterized protein LOC111025197 [Momordica charantia]2.3e-1870.51Show/hide
Query:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        I+ADKFEKD K V GHLLNHMN+SLFDLFVVQ   +  +D LE RYGGDDA RRKYV+ K +QFQMSD+K V  QVHE
Subjt:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

XP_038889290.1 uncharacterized protein LOC120079196 [Benincasa hispida]3.1e-1563.51Show/hide
Query:  KFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQRSF-DMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        KFEKD K VCGHLLNH+ +SLFDLFVVQ   +   D LE RYGGDDA R+KYVI+K +QFQ+ D K +   VHE
Subjt:  KFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQRSF-DMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

TrEMBL top hitse value%identityAlignment
A0A5A7V1I1 Ty1-copia retrotransposon protein5.6e-1556.96Show/hide
Query:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQRS-FDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        +I  +K+ KD K V GHLLNHM++ +FDLFVVQN  +  +  LE RYGGDDA R+KYV+ K +QFQM+D+K V  Q+HE
Subjt:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQRS-FDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

A0A6J1DAK7 uncharacterized protein LOC1110185591.9e-1558.23Show/hide
Query:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        +  ADKF+KD K +  HLLNHMNNSLFD FV +   +  +D LE RYGGDDA R+KYV+ K +QFQM+D+K +  QVHE
Subjt:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

A0A6J1DGM8 uncharacterized protein LOC1110199002.4e-1864.56Show/hide
Query:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        +++ADKFEKD K + GHLLNHMNNSLF LFVVQ   +  +DM E RYGGDDA RRKYV+ K ++FQMSD++ V +QVHE
Subjt:  IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

A0A6J1DHJ4 uncharacterized protein LOC1110211479.3e-1866.67Show/hide
Query:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        ++ADKFEKD K + GHLLNHMN+ LFDLFVVQ   +  +D LE RYGGDDA RRKYV+ K +QFQMSD+K V  QVHE
Subjt:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

A0A6J1DWN1 uncharacterized protein LOC1110251971.1e-1870.51Show/hide
Query:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE
        I+ADKFEKD K V GHLLNHMN+SLFDLFVVQ   +  +D LE RYGGDDA RRKYV+ K +QFQMSD+K V  QVHE
Subjt:  IKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQR-SFDMLEYRYGGDDARRRKYVIDK-IQFQMSDNKQVTSQVHE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATCATCAAAGCTGATAAATTCGAGAAAGACAAAAAAATGGTATGTGGGCATCTTCTTAACCATATGAACAACTCTCTCTTTGATCTCTTTGTAGTCCAAAATCTGCAAAG
GTCATTTGACATGTTAGAGTATAGATATGGTGGGGACGATGCACGTAGGAGGAAGTACGTCATTGATAAAATACAATTTCAAATGTCGGACAACAAACAGGTGACAAGTC
AGGTTCATGAG
mRNA sequenceShow/hide mRNA sequence
ATCATCAAAGCTGATAAATTCGAGAAAGACAAAAAAATGGTATGTGGGCATCTTCTTAACCATATGAACAACTCTCTCTTTGATCTCTTTGTAGTCCAAAATCTGCAAAG
GTCATTTGACATGTTAGAGTATAGATATGGTGGGGACGATGCACGTAGGAGGAAGTACGTCATTGATAAAATACAATTTCAAATGTCGGACAACAAACAGGTGACAAGTC
AGGTTCATGAG
Protein sequenceShow/hide protein sequence
IIKADKFEKDKKMVCGHLLNHMNNSLFDLFVVQNLQRSFDMLEYRYGGDDARRRKYVIDKIQFQMSDNKQVTSQVHE