CuGenDBv2

Gene ID	MS004783
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	vacuolar protein sorting-associated protein 2 homolog 3
Genome location	scaffold176:342544..343066
RNA-Seq Expression	MS004783
Synteny	MS004783
Gene Ontology terms	GO:0015031 - protein transport (biological process) GO:0032509 - endosome transport via multivesicular body sorting pathway (biological process) GO:0045324 - late endosome to vacuole transport (biological process) GO:0000815 - ESCRT III complex (cellular component) GO:0005771 - multivesicular body (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR005024 - Snf7 family

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042004.1 vacuolar protein sorting-associated protein 2-like protein 3 [Cucumis melo var. makuwa]

4.3e-28

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

XP_004150360.1 vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis sativus]

4.3e-28

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

XP_008447230.1 PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo]

4.3e-28

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

XP_022156097.1 vacuolar protein sorting-associated protein 2 homolog 3 [Momordica charantia]

1.5e-28

96.25

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

XP_022953389.1 vacuolar protein sorting-associated protein 2 homolog 3-like [Cucurbita moschata]

2.1e-27

93.75

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIA LQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K5C0 Uncharacterized protein

2.1e-28

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

A0A1S3BGD8 vacuolar protein sorting-associated protein 2 homolog 3

2.1e-28

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

A0A5D3D2N2 Vacuolar protein sorting-associated protein 2-like protein 3

2.1e-28

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

A0A6J1DR44 vacuolar protein sorting-associated protein 2 homolog 3

7.1e-29

96.25

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

A0A6J1GPI2 vacuolar protein sorting-associated protein 2 homolog 3-like

1.0e-27

93.75

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIA LQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAM+AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

SwissProt top hits

e value

%identity

Alignment

Q0WTY4 Vacuolar protein sorting-associated protein 2 homolog 2

2.1e-25

77.5

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EK+LVAEIK+TAKTGNEAATKILARQLVRLRQQI NLQGSRAQ+RG+ THTQA++A TS+++GMK A+KAM AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

Q5F3A2 Charged multivesicular body protein 2b

1.9e-07

41.25

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  QE++L  EIK+ AKTGN+ A K+LA+QLV+LR+Q        +++  ++T T+ M++Q  +A  M + +K M A+NK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

Q66IV6 Charged multivesicular body protein 2b-B

2.5e-07

41.25

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  QEK+L  EIK+ AKTGN+ A ++LA+QLV+LR+Q        +++  ++T T+ M +Q  +A  M + +K M A+NK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

Q941D5 Vacuolar protein sorting-associated protein 2 homolog 3

1.1e-26

83.75

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLV EIKRTAK+GNE ATKILARQL+RLRQQIANLQGSRAQMRGIATHTQAMHA TSVAAGM+ A+KAM AM+K
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

Q9SKI2 Vacuolar protein sorting-associated protein 2 homolog 1

2.5e-07

38.75

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  QEKKL+ EIK+TAK G   A K++A+ L+R R QI      ++Q++G++   Q + +  ++   MK  +KAM  MN+
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

Arabidopsis top hits

e value

%identity

Alignment

AT1G03950.1 vacuolar protein sorting-associated protein 2.3

7.8e-28

83.75

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EKKLV EIKRTAK+GNE ATKILARQL+RLRQQIANLQGSRAQMRGIATHTQAMHA TSVAAGM+ A+KAM AM+K
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

AT2G06530.1 SNF7 family protein

1.8e-08

38.75

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  QEKKL+ EIK+TAK G   A K++A+ L+R R QI      ++Q++G++   Q + +  ++   MK  +KAM  MN+
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

AT5G44560.1 SNF7 family protein

1.5e-26

77.5

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EK+LVAEIK+TAKTGNEAATKILARQLVRLRQQI NLQGSRAQ+RG+ THTQA++A TS+++GMK A+KAM AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

AT5G44560.2 SNF7 family protein

1.5e-26

77.5

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Query:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK
        L  +EK+LVAEIK+TAKTGNEAATKILARQLVRLRQQI NLQGSRAQ+RG+ THTQA++A TS+++GMK A+KAM AMNK
Subjt:  LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

Sequences

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CDS sequence

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TTATCTTATCAGGAAAAGAAGCTTGTCGCAGAAATAAAGAGAACTGCCAAAACAGGAAATGAGGCAGCAACAAAGATTCTTGCTCGGCAGCTAGTTAGGCTCAGACAGCA
AATTGCAAACTTACAAGGAAGTCGAGCTCAAATGAGAGGCATAGCAACTCATACACAGGCAATGCATGCTCAGACTTCCGTTGCTGCTGGCATGAAAAGTGCCAGTAAAG
CAATGACAGCTATGAATAAG

mRNA sequence

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Protein sequence

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LSYQEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIANLQGSRAQMRGIATHTQAMHAQTSVAAGMKSASKAMTAMNK

MS004783 (gene) of Bitter gourd (TR) v1 genome