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MS004784 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004784
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionvacuolar protein sorting-associated protein 2 homolog 3
Genome locationscaffold176:343975..345568
RNA-Seq ExpressionMS004784
SyntenyMS004784
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0032509 - endosome transport via multivesicular body sorting pathway (biological process)
GO:0045324 - late endosome to vacuole transport (biological process)
GO:0000815 - ESCRT III complex (cellular component)
GO:0005771 - multivesicular body (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR005024 - Snf7 family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576028.1 Vacuolar protein sorting-associated protein 2-like 3, partial [Cucurbita argyrosperma subsp. sororia]2.5e-3197.56Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

XP_008447230.1 PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo]3.2e-3196.34Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVD+ASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

XP_022156097.1 vacuolar protein sorting-associated protein 2 homolog 3 [Momordica charantia]5.0e-3298.78Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

XP_022991664.1 vacuolar protein sorting-associated protein 2 homolog 3-like [Cucurbita maxima]2.5e-3197.56Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

XP_023549260.1 vacuolar protein sorting-associated protein 2 homolog 3-like isoform X1 [Cucurbita pepo subsp. pepo]2.5e-3197.56Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

TrEMBL top hitse value%identityAlignment
A0A0A0K5C0 Uncharacterized protein3.5e-3196.3Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGV
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVD+ASQLSTAPKGRIASKNTEGV
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGV

A0A1S3BGD8 vacuolar protein sorting-associated protein 2 homolog 31.6e-3196.34Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVD+ASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

A0A5D3D2N2 Vacuolar protein sorting-associated protein 2-like protein 31.6e-3196.34Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVD+ASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

A0A6J1DR44 vacuolar protein sorting-associated protein 2 homolog 32.4e-3298.78Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

A0A6J1JVH0 vacuolar protein sorting-associated protein 2 homolog 3-like1.2e-3197.56Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
        +QMNPVKQAKVIREFQ QSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS

SwissProt top hitse value%identityAlignment
Q0WTY4 Vacuolar protein sorting-associated protein 2 homolog 22.0e-2377.63Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASK
        +QM P KQAKVI++FQ QSAQ+DMT EM+S+AID+ LD DEAEEETEDLTNQVLDEIGV +ASQLS+APKGRIA+K
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASK

Q66IV6 Charged multivesicular body protein 2b-B1.2e-0944.93Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAP
        ++M+P K  + ++ FQ ++ +M+MT EMI+D +DD  D  E EEE++D+ NQVLDEIG++I+ +++ AP
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAP

Q7SYR0 Charged multivesicular body protein 2b-A1.2e-0944.93Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAP
        ++M+P K  + ++ FQ ++ +M+MT EMI+D +DD  D  E EEE++D+ NQVLDEIG++I+ +++ AP
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAP

Q941D5 Vacuolar protein sorting-associated protein 2 homolog 32.5e-2677.78Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGV
        + M+P KQAKV+REFQ QSAQMDMTTEM+SD+IDDALD+DEAE+ETEDLTNQVLDEIG+DIASQLS+APKG+I  K  E V
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGV

Q9SKI2 Vacuolar protein sorting-associated protein 2 homolog 13.2e-1354.05Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIA
        +QMN     K+++EF+ Q+ +M+M +E++ DAIDDAL+ DE EEETEDL +QVLDEIG+DI  +L  AP G +A
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIA

Arabidopsis top hitse value%identityAlignment
AT1G03950.1 vacuolar protein sorting-associated protein 2.31.8e-2777.78Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGV
        + M+P KQAKV+REFQ QSAQMDMTTEM+SD+IDDALD+DEAE+ETEDLTNQVLDEIG+DIASQLS+APKG+I  K  E V
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGV

AT2G06530.1 SNF7 family protein2.2e-1454.05Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIA
        +QMN     K+++EF+ Q+ +M+M +E++ DAIDDAL+ DE EEETEDL +QVLDEIG+DI  +L  AP G +A
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIA

AT5G44560.1 SNF7 family protein1.4e-2477.63Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASK
        +QM P KQAKVI++FQ QSAQ+DMT EM+S+AID+ LD DEAEEETEDLTNQVLDEIGV +ASQLS+APKGRIA+K
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASK

AT5G44560.2 SNF7 family protein1.4e-2477.63Show/hide
Query:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASK
        +QM P KQAKVI++FQ QSAQ+DMT EM+S+AID+ LD DEAEEETEDLTNQVLDEIGV +ASQLS+APKGRIA+K
Subjt:  QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CAGCAAATGAATCCTGTGAAGCAAGCAAAGGTCATTAGGGAATTTCAGATGCAGTCTGCACAGATGGATATGACTACTGAGATGATTTCAGATGCCATAGATGATGCCCT
GGATGATGATGAGGCAGAAGAAGAAACTGAAGATCTAACGAATCAGGTACTCGACGAAATCGGCGTTGATATTGCCTCACAGCTTTCAACAGCTCCAAAAGGAAGAATTG
CCTCAAAGAATACTGAGGGTGTCAGT
mRNA sequenceShow/hide mRNA sequence
CAGCAAATGAATCCTGTGAAGCAAGCAAAGGTCATTAGGGAATTTCAGATGCAGTCTGCACAGATGGATATGACTACTGAGATGATTTCAGATGCCATAGATGATGCCCT
GGATGATGATGAGGCAGAAGAAGAAACTGAAGATCTAACGAATCAGGTACTCGACGAAATCGGCGTTGATATTGCCTCACAGCTTTCAACAGCTCCAAAAGGAAGAATTG
CCTCAAAGAATACTGAGGGTGTCAGT
Protein sequenceShow/hide protein sequence
QQMNPVKQAKVIREFQMQSAQMDMTTEMISDAIDDALDDDEAEEETEDLTNQVLDEIGVDIASQLSTAPKGRIASKNTEGVS