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MS004789 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004789
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold176:461426..461674
RNA-Seq ExpressionMS004789
SyntenyMS004789
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0550818.1 hypothetical protein BDA96_01G370300 [Sorghum bicolor]5.1e-1651.25Show/hide
Query:  VLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGK-DLWCPIRYEKLLDFCYDCGMIGHSNRECD
        ++LG ++G    V+ E  G   G FLR +VKIDI KPL RG+ +  +EG+ D WCPIRYE L +FCY CG++GH  +ECD
Subjt:  VLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGK-DLWCPIRYEKLLDFCYDCGMIGHSNRECD
OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]5.1e-1651.25Show/hide
Query:  VLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGK-DLWCPIRYEKLLDFCYDCGMIGHSNRECD
        ++LG ++G    V+ E  G   G FLR +VKIDI KPL RG+ +  +EG+ D WCPIRYE L +FCY CG++GH  +ECD
Subjt:  VLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGK-DLWCPIRYEKLLDFCYDCGMIGHSNRECD
XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.6e-3069.51Show/hide
Query:  EMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRECD
        EMA +LG KLG+VEE+E +G  GWAGPF+R RVKID+SKPLRRG+++++S+GKD+WCP+RYEKL DFCY+CG IGHS REC+
Subjt:  EMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRECD
XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]2.1e-2259.26Show/hide
Query:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRE
        K+MA  LG +LGEVEEV+      W  PFL  RVKI++ KPLRRG+++++S+GKD+WCP+RYE+L DFCY CG +GHS RE
Subjt:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRE
XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]8.7e-1653.01Show/hide
Query:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEG-KDLWCPIRYEKLLDFCYDCGMIGHSNREC
        KE+A+ +G +LGE  EV+ E     AG FLR +V+I+I KPLRRG+ I   EG ++ WCPI YE L DFCY CG IGH+++ C
Subjt:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEG-KDLWCPIRYEKLLDFCYDCGMIGHSNREC
TrEMBL top hitse value%identityAlignment
A0A1Z5S941 CCHC-type domain-containing protein2.5e-1651.25Show/hide
Query:  VLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGK-DLWCPIRYEKLLDFCYDCGMIGHSNRECD
        ++LG ++G    V+ E  G   G FLR +VKIDI KPL RG+ +  +EG+ D WCPIRYE L +FCY CG++GH  +ECD
Subjt:  VLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGK-DLWCPIRYEKLLDFCYDCGMIGHSNRECD
A0A6J1D765 uncharacterized protein LOC1110179021.8e-3069.51Show/hide
Query:  EMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRECD
        EMA +LG KLG+VEE+E +G  GWAGPF+R RVKID+SKPLRRG+++++S+GKD+WCP+RYEKL DFCY+CG IGHS REC+
Subjt:  EMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRECD
A0A6J1DP89 uncharacterized protein LOC1110229322.7e-1555.56Show/hide
Query:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYE
        K+MA  LG ++GEVEE++C G   W GPF+R RV+IDISKP +RG+++R+ + K+ WCP+RYE
Subjt:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYE
A0A6J1DU55 uncharacterized protein LOC1110231351.8e-1450Show/hide
Query:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIR-SSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRECD
        K MA+ LG  +G   +V+C   G   G  LR RV IDI+KPLRRG++I         W PI+YE+L DFCY CG+IGHS+ +CD
Subjt:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIR-SSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRECD
A0A6J1DVS4 uncharacterized protein LOC1110235551.0e-2259.26Show/hide
Query:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRE
        K+MA  LG +LGEVEEV+      W  PFL  RVKI++ KPLRRG+++++S+GKD+WCP+RYE+L DFCY CG +GHS RE
Subjt:  KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42140.1 zinc ion binding;nucleic acid binding4.8e-0436.36Show/hide
Query:  FLRTRVKIDISKPLRRGMRIRSSEGKDL-WCPIRYEKLLDFCYDCGMIGHSNREC
        FL  R+   I +  R G+ + ++ G+D+     +YEKL +FC  CGM+ H   EC
Subjt:  FLRTRVKIDISKPLRRGMRIRSSEGKDL-WCPIRYEKLLDFCYDCGMIGHSNREC
AT5G36228.1 nucleic acid binding;zinc ion binding1.3e-0427.27Show/hide
Query:  LLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNREC
        ++   LGEV  ++          F+R +V++D ++PLR   R+R +  +       YEKL   C +C  + H    C
Subjt:  LLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNREC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAAGAAATGGCGGTGCTTTTAGGAGGCAAATTGGGGGAAGTGGAGGAAGTTGAATGTGAAGGCCCTGGTGGCTGGGCAGGACCCTTCTTACGAACGCGGGTGAAGATAGA
CATTTCAAAACCCCTGCGAAGAGGCATGAGGATTAGAAGTAGTGAAGGAAAAGACCTATGGTGTCCTATCCGATATGAAAAGCTCCTAGATTTTTGTTATGATTGTGGAA
TGATTGGCCATTCGAATAGAGAATGTGAT
mRNA sequenceShow/hide mRNA sequence
AAAGAAATGGCGGTGCTTTTAGGAGGCAAATTGGGGGAAGTGGAGGAAGTTGAATGTGAAGGCCCTGGTGGCTGGGCAGGACCCTTCTTACGAACGCGGGTGAAGATAGA
CATTTCAAAACCCCTGCGAAGAGGCATGAGGATTAGAAGTAGTGAAGGAAAAGACCTATGGTGTCCTATCCGATATGAAAAGCTCCTAGATTTTTGTTATGATTGTGGAA
TGATTGGCCATTCGAATAGAGAATGTGAT
Protein sequenceShow/hide protein sequence
KEMAVLLGGKLGEVEEVECEGPGGWAGPFLRTRVKIDISKPLRRGMRIRSSEGKDLWCPIRYEKLLDFCYDCGMIGHSNRECD