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MS004792 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004792
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Genome locationscaffold176:468102..468302
RNA-Seq ExpressionMS004792
SyntenyMS004792
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143317.1 uncharacterized protein LOC111013216 [Momordica charantia]1.0e-0642.19Show/hide
Query:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ
        W+  P   W LNTDA+WSE ++ GG+GW+L +    I LA NC +     +  LE M I+ G+Q
Subjt:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]8.5e-1454.55Show/hide
Query:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQNL
        W P P   WTLN DA+WS+    GG+GW++R+W+  I LA N FV+ C +VK+LEA AILEG++NL
Subjt:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQNL

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.1e-0437.5Show/hide
Query:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ
        W P    +W LNTDAAW      GG+GW+LR+ +  +  A+   +    ++  LE MAI EG++
Subjt:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ

XP_038886170.1 uncharacterized protein LOC120076417 [Benincasa hispida]3.6e-0442.42Show/hide
Query:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQNL
        W P  PF W LN DA+W+    A GLGWV  +    + +A   FV  C  V +LEA+AI  G++ L
Subjt:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQNL

TrEMBL top hitse value%identityAlignment
A0A6J1CQG0 uncharacterized protein LOC1110132164.9e-0742.19Show/hide
Query:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ
        W+  P   W LNTDA+WSE ++ GG+GW+L +    I LA NC +     +  LE M I+ G+Q
Subjt:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ

A0A6J1DNV9 uncharacterized protein LOC1110224034.1e-1454.55Show/hide
Query:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQNL
        W P P   WTLN DA+WS+    GG+GW++R+W+  I LA N FV+ C +VK+LEA AILEG++NL
Subjt:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQNL

A0A6J1DSV1 uncharacterized protein LOC1110236083.0e-0437.5Show/hide
Query:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ
        W P    +W LNTDAAW      GG+GW+LR+ +  +  A+   +    ++  LE MAI EG++
Subjt:  WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGGACCCCTCATCCCCCTTTTACCTGGACACTGAATACTGATGCGGCTTGGTCGGAGATTCAGCAGGCAGGGGGACTTGGGTGGGTCTTGCGTAATTGGGAAGCTGTCAT
CACTCTAGCAGAAAACTGTTTCGTCGATAATTGTGGGAGTGTGAAGATGTTGGAAGCCATGGCTATTCTGGAAGGAATGCAGAACTTGCTG
mRNA sequenceShow/hide mRNA sequence
TGGACCCCTCATCCCCCTTTTACCTGGACACTGAATACTGATGCGGCTTGGTCGGAGATTCAGCAGGCAGGGGGACTTGGGTGGGTCTTGCGTAATTGGGAAGCTGTCAT
CACTCTAGCAGAAAACTGTTTCGTCGATAATTGTGGGAGTGTGAAGATGTTGGAAGCCATGGCTATTCTGGAAGGAATGCAGAACTTGCTG
Protein sequenceShow/hide protein sequence
WTPHPPFTWTLNTDAAWSEIQQAGGLGWVLRNWEAVITLAENCFVDNCGSVKMLEAMAILEGMQNLL