CuGenDBv2

Gene ID	MS004795
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	scaffold176:489133..489849
RNA-Seq Expression	MS004795
Synteny	MS004795
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]

3.0e-45

47.64

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGS-SLNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWWGS  + +K+HWMSWE++C PKELGGLN R+LEGFNQAL+A QVW+V+ + ++LV +VLKA+YF  S  L     ++ SYF + F+WG++LL+K  + 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGS-SLNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RVNCQSTY-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRS
        RV   ST  +F D WI    + +PIT   G   + VAD    +G WDV  ++  F  ED D+I  +P       D W+WH+DKRG YNV+S
Subjt:  RVNCQSTY-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]

2.9e-56

46.78

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Query:  EKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQRVNCQST
        E RK+HWM W ++CYPKE GGLN R+LEGFNQAL+A  VW+ +   +LLV KVLK +YF  +S L        SYF + F+WG++LL+K  + RV   ST
Subjt:  EKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQRVNCQST

Query:  Y-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNLKIDTSPST
           F D W+   TT KP+   NG     VA F   DGNWDV  ++  F  ED D+I  +P  +    D W+WHYDKRG+Y+VRSGYKLYM+LK + + ++
Subjt:  Y-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNLKIDTSPST

Query:  MVENQIFWRSVWSLGVSTKIRHFLWKALHNILP
               W S+W L V TKI+ F+W++ H  +P
Subjt:  MVENQIFWRSVWSLGVSTKIRHFLWKALHNILP

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]

2.5e-47

39.83

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWWG+  +++ +HW  WE++ + K  GG+  R+L  FNQAL+A Q W+++     LV +VLKARYF  +  +N  +G  PS+  RS VWG+ +L K  + 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RV-NCQSTYVFKDRWISWETTLKPIT-PANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNL
        R+ N Q+  V+ + WI   TT KPI+ P+ G DT  VA+       W    +   F PED + I QIP     + D  +WHYDK+G Y+V+SGY++ M +
Subjt:  RV-NCQSTYVFKDRWISWETTLKPIT-PANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNL

Query:  KIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP
        K    PS    +Q  WR +W L +  K++ FLW+A H++LP
Subjt:  KIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]

5.1e-45

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWWGS  +KR +HW  WEKL   K  GGL  RE   FNQAL+A Q W+++   + LV +VL+ARYF  SS L    G + SY  RS +WG+ ++ K  + 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RV-NCQSTYVFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNLK
        R+ N +   +F D W+    T +PI P +   + VVAD    D  WD +KL   F   D   I +IP       D  +WHYDKRG+Y+V+SGY+L +  K
Subjt:  RV-NCQSTYVFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNLK

Query:  IDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP
           S S    +  +W ++W+L +  K++ F+W+A +N+LP
Subjt:  IDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP

XP_030505522.1 uncharacterized protein LOC115720515 [Cannabis sativa]

1.5e-44

39.92

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        +WWGSF  KRK+HW +W+KLC+ K  GGL  R    +NQALLA Q W+V+ +   ++ +VLKARYF   S L      HPS   R  VWG+ LL+K  ++
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RV-NCQSTYVFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYM---
        R+ N  +T VFKD WI    +  PIT   GN  ++V++     G W++  ++  F   D  +I  IP       D W+WH+   G Y+V+SGY L +   
Subjt:  RV-NCQSTYVFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYM---

Query:  NLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP
        NL+  +S   M     +W S W++ +  KI HF WK  H ILP
Subjt:  NLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP

TrEMBL top hits

e value

%identity

Alignment

A0A5E4FZN9 PREDICTED: retrotransposon

2.7e-44

38.27

Show/hide

Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLG-SSLNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWW    +KR +HW+ WE LC  K  GGL  R+LE FNQALLA Q W+++ + + LV ++ +ARY      L  ++G +PS+  RS  WG+ LL K  + 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLG-SSLNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RV-NCQSTYVFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKL--YMN
        RV N  S  V+ D+W+   +  K ++P     + +V D F   G W+V  L   FW ++VD   QIP  +    D  +WHY++ G Y+V+SGY+L     
Subjt:  RV-NCQSTYVFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKL--YMN

Query:  LKIDTSPSTMVE-NQIFWRSVWSLGVSTKIRHFLWKALHNILP
         K+   PS  V+ N  FW+ +W+L +  KI+ FLW+   + LP
Subjt:  LKIDTSPSTMVE-NQIFWRSVWSLGVSTKIRHFLWKALHNILP

A0A6J1BRN0 uncharacterized protein LOC111004787

1.5e-45

47.64

Show/hide

Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGS-SLNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWWGS  + +K+HWMSWE++C PKELGGLN R+LEGFNQAL+A QVW+V+ + ++LV +VLKA+YF  S  L     ++ SYF + F+WG++LL+K  + 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGS-SLNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RVNCQSTY-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRS
        RV   ST  +F D WI    + +PIT   G   + VAD    +G WDV  ++  F  ED D+I  +P       D W+WH+DKRG YNV+S
Subjt:  RVNCQSTY-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRS

A0A6J1DX30 uncharacterized protein LOC111024874

1.4e-56

46.78

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Query:  EKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQRVNCQST
        E RK+HWM W ++CYPKE GGLN R+LEGFNQAL+A  VW+ +   +LLV KVLK +YF  +S L        SYF + F+WG++LL+K  + RV   ST
Subjt:  EKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQRVNCQST

Query:  Y-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNLKIDTSPST
           F D W+   TT KP+   NG     VA F   DGNWDV  ++  F  ED D+I  +P  +    D W+WHYDKRG+Y+VRSGYKLYM+LK + + ++
Subjt:  Y-VFKDRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNLKIDTSPST

Query:  MVENQIFWRSVWSLGVSTKIRHFLWKALHNILP
               W S+W L V TKI+ F+W++ H  +P
Subjt:  MVENQIFWRSVWSLGVSTKIRHFLWKALHNILP

A0A803Q1K6 Uncharacterized protein

7.2e-45

40.57

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWWGS  +++K+HW  W  LC PK+ GGL  R+L  FNQALLA Q+W+ +    LL  +VLKA YF     L    G + S+  RS VWG+ L+LK ++ 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RV-NCQSTYVFKDRWISWETTLK----PITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLY
        RV N +S  V +D W+    T K    P  PAN    L V D    DG WD   + S F P D D+I  IP  +    D  +WHY K G Y+V+SGY++ 
Subjt:  RV-NCQSTYVFKDRWISWETTLK----PITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLY

Query:  MNLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP
         +L  +   S       +W+ +W L    K++HF+WK  HN LP
Subjt:  MNLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP

A0A803QQT2 Uncharacterized protein

1.2e-44

40.57

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWWGS  +++K+HW  W  LC PK+ GGL  R+L  FNQALLA Q+W+ +    LL  +VLKA YF     L    G + S+  RS VWG+ L+LK ++ 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RV-NCQSTYVFKDRWISWETTLK----PITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLY
        RV N +S  V +D W+    T K    P  PAN    L V D    DG WD   + S F P DVD+I  IP  +    D  +WHY K G Y+V+SGY++ 
Subjt:  RV-NCQSTYVFKDRWISWETTLK----PITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLY

Query:  MNLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP
         +   +   S       +W+ +W L +  K++HF+WK  HN LP
Subjt:  MNLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLWKALHNILP

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

5.2e-16

27.39

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSSLNTD--IGKHP-SYFLRSFVWGQNLLLKKF
        F WGS  EK+K H + W K+C PK+ GGL VR  +  N+AL++   W+++   + L   VL+ +Y +G   ++   I K   S   RS   G   ++   
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSSLNTD--IGKHP-SYFLRSFVWGQNLLLKKF

Query:  QQRV--NCQSTYVFKDRWISWETTLKPITPANGN-----DTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRA-DGWVWHYDKRGSYNVRS
           +  + Q    + DRW+S +  L+     NG      DT+V  D +     WD  K++ +        ++ +     T A D   W + + G ++VRS
Subjt:  QQRV--NCQSTYVFKDRWISWETTLKPITPANGN-----DTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRA-DGWVWHYDKRGSYNVRS

Query:  GYKLYMNLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLW
         Y++   L +D  P   + +  F+  +W + V  +++ FLW
Subjt:  GYKLYMNLKIDTSPSTMVENQIFWRSVWSLGVSTKIRHFLW

P93295 Uncharacterized mitochondrial protein AtMg00310

3.8e-19

42.06

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKE-LGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQ
        FWW S   KRK+ W++W+KLC  KE  GGL  R+L  FNQALLA Q ++++     L+ ++L++RYF  SS +   +G  PSY  RS + G+ LL +   
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKE-LGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQ

Query:  QRV-NCQSTYVFKDRWISWETTLKPI
        + + +   T V+ DRWI  ET L P+
Subjt:  QRV-NCQSTYVFKDRWISWETTLKPI

Arabidopsis top hits

e value

%identity

Alignment

AT4G29090.1 Ribonuclease H-like superfamily protein

6.1e-28

29.37

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ
        FWW +  E + MHW +W+ L   K  GG+  +++E FN ALL  Q+W++++  + L+ KV K+RYF  S  LN  +G  PS+  +S    Q +L +  + 
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQQ

Query:  RV-NCQSTYVFKDRWISWETT--------LKPITPANGNDTLVVADFFGVDG-NWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRS
         V N +   +++ +W+  +          + P   A+ +  L V+D     G  W    +   F   +  +I ++        D + W Y   G Y V+S
Subjt:  RV-NCQSTYVFKDRWISWETT--------LKPITPANGNDTLVVADFFGVDG-NWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRS

Query:  GY-KLYMNLKIDTSPSTMVENQI--FWRSVWSLGVSTKIRHFLWKALHNILP
        GY  L   +   +SP  + E  +   ++ +W    S KI+HFLWK L N LP
Subjt:  GY-KLYMNLKIDTSPSTMVENQI--FWRSVWSLGVSTKIRHFLWKALHNILP

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.7e-20

42.06

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Query:  FWWGSFVEKRKMHWMSWEKLCYPKE-LGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQ
        FWW S   KRK+ W++W+KLC  KE  GGL  R+L  FNQALLA Q ++++     L+ ++L++RYF  SS +   +G  PSY  RS + G+ LL +   
Subjt:  FWWGSFVEKRKMHWMSWEKLCYPKE-LGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSS-LNTDIGKHPSYFLRSFVWGQNLLLKKFQ

Query:  QRV-NCQSTYVFKDRWISWETTLKPI
        + + +   T V+ DRWI  ET L P+
Subjt:  QRV-NCQSTYVFKDRWISWETTLKPI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

TTTTGGTGGGGCTCATTTGTAGAGAAAAGGAAGATGCATTGGATGAGCTGGGAGAAGTTGTGTTATCCAAAGGAACTCGGAGGCTTGAATGTCAGGGAGCTTGAGGGTTT
CAATCAAGCTCTCCTTGCGAGTCAGGTTTGGAAGGTGGTGACCTCCCTGGATCTTTTGGTGTTCAAGGTGTTGAAAGCAAGGTATTTTCTTGGTTCTTCTTTGAATACCG
ATATTGGCAAACATCCTTCCTATTTTTTGCGTAGCTTTGTTTGGGGACAAAATCTTCTTCTAAAGAAGTTCCAACAGAGGGTGAATTGCCAGTCAACCTATGTTTTTAAA
GATAGATGGATTTCTTGGGAGACTACTCTGAAGCCTATTACTCCAGCAAATGGAAATGATACTTTGGTGGTGGCTGATTTTTTTGGGGTGGATGGTAACTGGGATGTCCT
AAAGCTGAATAGTTTCTTCTGGCCTGAAGATGTGGATATTATTAAGCAAATACCGAGATGTAATTCTACTCGAGCAGATGGTTGGGTGTGGCATTACGACAAGAGGGGCT
CCTACAATGTAAGAAGCGGCTACAAACTTTATATGAACTTGAAGATTGACACTTCCCCTTCTACTATGGTTGAAAATCAGATATTTTGGAGAAGTGTGTGGAGTTTAGGT
GTGTCTACAAAAATTAGACATTTCCTGTGGAAGGCTTTACATAATATTCTCCCT

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

FWWGSFVEKRKMHWMSWEKLCYPKELGGLNVRELEGFNQALLASQVWKVVTSLDLLVFKVLKARYFLGSSLNTDIGKHPSYFLRSFVWGQNLLLKKFQQRVNCQSTYVFK
DRWISWETTLKPITPANGNDTLVVADFFGVDGNWDVLKLNSFFWPEDVDIIKQIPRCNSTRADGWVWHYDKRGSYNVRSGYKLYMNLKIDTSPSTMVENQIFWRSVWSLG
VSTKIRHFLWKALHNILP

MS004795 (gene) of Bitter gourd (TR) v1 genome