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MS004797 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004797
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L5-like
Genome locationscaffold176:526094..526907
RNA-Seq ExpressionMS004797
SyntenyMS004797
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005485 - Ribosomal protein L5 eukaryotic/L18 archaeal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144191.1 60S ribosomal protein L5-like [Cucumis sativus]5.0e-4983.2Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIR TNKDIT QIVSSSIAGD+++AAAYSHEL RYGLEVGLTNYAA YCTGLL+ARRVLKKLEMD EYE       ED+SVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

XP_008445491.1 PREDICTED: 60S ribosomal protein L5-like [Cucumis melo]2.9e-4984Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIRFTNKDIT QIVSSSIAGD+V+A+AYSHEL  YGLEVGLTNYAA YCTGLLLARRVLKKLEMD EYE       ED+SVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

XP_022131844.1 60S ribosomal protein L5-like [Momordica charantia]1.0e-4984.8Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIRFTNKDIT QIVSSSIAGD+V+AAAYSHEL  YGLEVGLTNYAA YCTGLLLARRVLK LEMDKEYE       EDFSVEPTD+R
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

XP_022151896.1 60S ribosomal protein L5-like [Momordica charantia]1.5e-5085.6Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDIT QIVSSSIAGD+V+AAAYSHEL  YGLEVGLTNYAA YCTGLLLARRVLKKLEMDKEYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

XP_038884001.1 60S ribosomal protein L5-like [Benincasa hispida]1.5e-5086.4Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIRFTNKDIT QIVSSSIAGD+V+AAAYSHEL RYGLEVGLTNYAA YCTGLLLARRVLKKLEMD EYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

TrEMBL top hitse value%identityAlignment
A0A0A0KFL3 Ribosomal_L18_c domain-containing protein2.4e-4983.2Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIR TNKDIT QIVSSSIAGD+++AAAYSHEL RYGLEVGLTNYAA YCTGLL+ARRVLKKLEMD EYE       ED+SVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

A0A1S3BCD6 60S ribosomal protein L5-like1.4e-4984Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIRFTNKDIT QIVSSSIAGD+V+A+AYSHEL  YGLEVGLTNYAA YCTGLLLARRVLKKLEMD EYE       ED+SVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

A0A5A7VC42 60S ribosomal protein L5-like1.4e-4984Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIRFTNKDIT QIVSSSIAGD+V+A+AYSHEL  YGLEVGLTNYAA YCTGLLLARRVLKKLEMD EYE       ED+SVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

A0A6J1BRE1 60S ribosomal protein L5-like4.8e-5084.8Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFVIRFTNKDIT QIVSSSIAGD+V+AAAYSHEL  YGLEVGLTNYAA YCTGLLLARRVLK LEMDKEYE       EDFSVEPTD+R
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

A0A6J1DG11 60S ribosomal protein L5-like7.5e-5185.6Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDIT QIVSSSIAGD+V+AAAYSHEL  YGLEVGLTNYAA YCTGLLLARRVLKKLEMDKEYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGLVRTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

SwissProt top hitse value%identityAlignment
A2WXX3 60S ribosomal protein L5-12.2e-4776Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDIT QIV ++IAGD+V+AAAYSHEL RYGLEVGLTNYAA YCTGLLLARRVLK   +D+EYE       ED+ VEP D R
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

P49227 60S ribosomal protein L5-22.3e-4979.2Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDI  QIVS+SIAGD+V A+AY+HEL +YGL VGLTNYAA YCTGLLLARRVLK LEMD EYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

Q0JGY1 60S ribosomal protein L5-12.2e-4776Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDIT QIV ++IAGD+V+AAAYSHEL RYGLEVGLTNYAA YCTGLLLARRVLK   +D+EYE       ED+ VEP D R
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

Q6UNT2 60S ribosomal protein L51.5e-4876.8Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+R +NKDIT QI+S+SIAGD+V+A+AYSHEL +YGLEVGLTNYAA YCTGLLLARRVLK LEMD EYE       ED+SVEP D+R
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

Q8LBI1 60S ribosomal protein L5-12.3e-4979.2Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDI  QIVS+SIAGD+V A+AY+HEL +YGL VGLTNYAA YCTGLLLARRVLK LEMD EYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

Arabidopsis top hitse value%identityAlignment
AT3G25520.1 ribosomal protein L51.6e-5079.2Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDI  QIVS+SIAGD+V A+AY+HEL +YGL VGLTNYAA YCTGLLLARRVLK LEMD EYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

AT3G25520.2 ribosomal protein L51.0e-1580.39Show/hide
Query:  LEMDKEYE-------EDFSVEPTDSRRPFKALLDVGLVRTTTGNRVFGALK
        LEMD EYE       EDFSVEPTDSRRPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  LEMDKEYE-------EDFSVEPTDSRRPFKALLDVGLVRTTTGNRVFGALK

AT5G39740.1 ribosomal protein L5 B1.6e-5079.2Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDI  QIVS+SIAGD+V A+AY+HEL +YGL VGLTNYAA YCTGLLLARRVLK LEMD EYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK

AT5G39740.2 ribosomal protein L5 B1.6e-5079.2Show/hide
Query:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR
        ++KNKY+TPKYRFV+RFTNKDI  QIVS+SIAGD+V A+AY+HEL +YGL VGLTNYAA YCTGLLLARRVLK LEMD EYE       EDFSVEPTDSR
Subjt:  KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYE-------EDFSVEPTDSR

Query:  RPFKALLDVGLVRTTTGNRVFGALK
        RPF+ALLDVGL+RTTTGNRVFGALK
Subjt:  RPFKALLDVGLVRTTTGNRVFGALK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGAACAAGAACAAGTACGACACTCCCAAATATCGCTTTGTTATTAGATTTACTAATAAGGATATTACAGAACAAATAGTATCTTCTAGCATTGCTGGTGATGTGGTTAT
TGCCGCAGCTTATTCTCATGAGTTATCTCGTTATGGTCTTGAAGTTGGTCTAACAAATTATGCTGCAACTTACTGTACTGGACTTCTCTTGGCTCGTCGTGTCTTGAAGA
AGCTCGAGATGGACAAAGAGTACGAGGAGGATTTCTCTGTGGAACCTACAGATAGCCGAAGGCCCTTCAAAGCTCTCCTTGATGTCGGTCTAGTCCGAACAACGACGGGA
AACCGTGTTTTTGGTGCTCTCAAG
mRNA sequenceShow/hide mRNA sequence
AAGAACAAGAACAAGTACGACACTCCCAAATATCGCTTTGTTATTAGATTTACTAATAAGGATATTACAGAACAAATAGTATCTTCTAGCATTGCTGGTGATGTGGTTAT
TGCCGCAGCTTATTCTCATGAGTTATCTCGTTATGGTCTTGAAGTTGGTCTAACAAATTATGCTGCAACTTACTGTACTGGACTTCTCTTGGCTCGTCGTGTCTTGAAGA
AGCTCGAGATGGACAAAGAGTACGAGGAGGATTTCTCTGTGGAACCTACAGATAGCCGAAGGCCCTTCAAAGCTCTCCTTGATGTCGGTCTAGTCCGAACAACGACGGGA
AACCGTGTTTTTGGTGCTCTCAAG
Protein sequenceShow/hide protein sequence
KNKNKYDTPKYRFVIRFTNKDITEQIVSSSIAGDVVIAAAYSHELSRYGLEVGLTNYAATYCTGLLLARRVLKKLEMDKEYEEDFSVEPTDSRRPFKALLDVGLVRTTTG
NRVFGALK