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MS004804 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004804
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold176:640662..640835
RNA-Seq ExpressionMS004804
SyntenyMS004804
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0881349.1 hypothetical protein [Gossypium schwendimanii]1.6e-0852.73Show/hide
Query:  VRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKV
        ++V LD+ K LRRGI I L G  E  WIP  YE+LP FC+GCG+I HK+ +C+ +
Subjt:  VRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKV

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]1.6e-0853.57Show/hide
Query:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDK
        +RVRV +D+SK LRRGIK+      +  W P+ YE LPDFCY CGKI H   EC++
Subjt:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDK

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]7.7e-1161.82Show/hide
Query:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECD
        LR+RV +DI+K LRRGIKIN+ G     WIPI YE LPDFCY CG I H   +CD
Subjt:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECD

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]1.2e-0873.33Show/hide
Query:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCG
        LRVRV LDISK LRRGIK+NL G     WIPI YE LPDFCY CG
Subjt:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCG

XP_040987632.1 uncharacterized protein LOC121235350 [Juglans microcarpa x Juglans regia]1.6e-0853.45Show/hide
Query:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKVE
        LR++V +D++K L RG  +NL G+S+ +WIP  YE LP+FCY CGKI H  G CDK++
Subjt:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKVE

TrEMBL top hitse value%identityAlignment
A0A1U8J279 uncharacterized protein LOC1079028491.7e-0848.21Show/hide
Query:  RVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKV
        R+RV L++ + LRRGI ++ IG+   FWIP  YE LP FC+GCG + H L +C ++
Subjt:  RVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKV

A0A6J1D765 uncharacterized protein LOC1110179027.7e-0953.57Show/hide
Query:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDK
        +RVRV +D+SK LRRGIK+      +  W P+ YE LPDFCY CGKI H   EC++
Subjt:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDK

A0A6J1DU55 uncharacterized protein LOC1110231353.7e-1161.82Show/hide
Query:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECD
        LR+RV +DI+K LRRGIKIN+ G     WIPI YE LPDFCY CG I H   +CD
Subjt:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECD

A0A6J1DX30 uncharacterized protein LOC1110248745.9e-0973.33Show/hide
Query:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCG
        LRVRV LDISK LRRGIK+NL G     WIPI YE LPDFCY CG
Subjt:  LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCG

A0A7J9NFL9 CCHC-type domain-containing protein7.7e-0952.73Show/hide
Query:  VRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKV
        ++V LD+ K LRRGI I L G  E  WIP  YE+LP FC+GCG+I HK+ +C+ +
Subjt:  VRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CTAAGGGTTCGGGTGTGGTTAGATATATCCAAGCTTTTGAGAAGAGGTATCAAAATTAACCTGATAGGCCACTCCGAGAGTTTTTGGATTCCGATTACGTATGAGAGTTT
GCCAGACTTTTGTTATGGATGTGGGAAGATAGCACATAAGTTGGGGGAGTGTGATAAGGTGGAA
mRNA sequenceShow/hide mRNA sequence
CTAAGGGTTCGGGTGTGGTTAGATATATCCAAGCTTTTGAGAAGAGGTATCAAAATTAACCTGATAGGCCACTCCGAGAGTTTTTGGATTCCGATTACGTATGAGAGTTT
GCCAGACTTTTGTTATGGATGTGGGAAGATAGCACATAAGTTGGGGGAGTGTGATAAGGTGGAA
Protein sequenceShow/hide protein sequence
LRVRVWLDISKLLRRGIKINLIGHSESFWIPITYESLPDFCYGCGKIAHKLGECDKVE