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MS004828 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004828
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCell wall protein
Genome locationscaffold176:858273..858629
RNA-Seq ExpressionMS004828
SyntenyMS004828
Gene Ontology termsNA
InterPro domainsIPR034565 - Putative cell wall protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4274401.1 unnamed protein product [Prunus armeniaca]2.0e-2148.46Show/hide
Query:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ
        MA +T SS LP+  L++++LA+ G+A A R+   K   DDKKQP+W +G+DG S LIPGIGR+  PP           D GS G   GS  G  P++   
Subjt:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ

Query:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP
        Y+PGGDD F+PNPG+EVPNP N  G   TP
Subjt:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP

CAB4304874.1 unnamed protein product [Prunus armeniaca]1.5e-2148.46Show/hide
Query:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ
        MA +T SS LP+  L++++LA+ G+A A R+   K   DDKKQP+W +G+DG S LIPGIGR+ +PP           D GS G   GS  G  P++   
Subjt:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ

Query:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP
        Y+PGGDD F+PNPG+EVPNP N  G   TP
Subjt:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP

KAA0065341.1 putative cell wall protein [Cucumis melo var. makuwa]1.9e-2460Show/hide
Query:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPN
        MA+R   SL PI  ++ILA+ GEA AAR+  E                   SVLIPGIGRITL PYDKGS  G H+ SYGSNPA   QYIPGGDDNFIPN
Subjt:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPN

Query:  PGFEVPNPANIGGVKATPHP
        PG+EVP PANIGGVK T +P
Subjt:  PGFEVPNPANIGGVKATPHP

XP_022140620.1 putative cell wall protein [Momordica charantia]1.2e-5899.16Show/hide
Query:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGEHAGSYGSNPASSGQYIPGGDDNFIPNP
        MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGEHAGSYGSNPASSGQYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGEHAGSYGSNPASSGQYIPGGDDNFIPNP

Query:  GFEVPNPANIGGVKATPHP
        GFEVPNPANIG VKATPHP
Subjt:  GFEVPNPANIGGVKATPHP

XP_022970746.1 putative cell wall protein [Cucurbita maxima]1.6e-3975Show/hide
Query:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGE-HAGSYGSNPASSGQYIPGGDDNFIPN
        MA RTI+SLL    I+ILA+AGEA AARN  E+SSIDDKKQP+W+ G+DGVSVLIPGIGR TL P+DKGS GE  AGSYGSNPA   QYIPGGDDNFIPN
Subjt:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGE-HAGSYGSNPASSGQYIPGGDDNFIPN

Query:  PGFEVPNPANIGGVKATPHP
        PGFEVP PA I GVK TP+P
Subjt:  PGFEVPNPANIGGVKATPHP

TrEMBL top hitse value%identityAlignment
A0A5D3BC54 Putative cell wall protein9.3e-2560Show/hide
Query:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPN
        MA+R   SL PI  ++ILA+ GEA AAR+  E                   SVLIPGIGRITL PYDKGS  G H+ SYGSNPA   QYIPGGDDNFIPN
Subjt:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSF-GEHAGSYGSNPASSGQYIPGGDDNFIPN

Query:  PGFEVPNPANIGGVKATPHP
        PG+EVP PANIGGVK T +P
Subjt:  PGFEVPNPANIGGVKATPHP

A0A6J1CFL0 putative cell wall protein5.7e-5999.16Show/hide
Query:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGEHAGSYGSNPASSGQYIPGGDDNFIPNP
        MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGEHAGSYGSNPASSGQYIPGGDDNFIPNP
Subjt:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGEHAGSYGSNPASSGQYIPGGDDNFIPNP

Query:  GFEVPNPANIGGVKATPHP
        GFEVPNPANIG VKATPHP
Subjt:  GFEVPNPANIGGVKATPHP

A0A6J1I1F6 putative cell wall protein7.8e-4075Show/hide
Query:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGE-HAGSYGSNPASSGQYIPGGDDNFIPN
        MA RTI+SLL    I+ILA+AGEA AARN  E+SSIDDKKQP+W+ G+DGVSVLIPGIGR TL P+DKGS GE  AGSYGSNPA   QYIPGGDDNFIPN
Subjt:  MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGE-HAGSYGSNPASSGQYIPGGDDNFIPN

Query:  PGFEVPNPANIGGVKATPHP
        PGFEVP PA I GVK TP+P
Subjt:  PGFEVPNPANIGGVKATPHP

A0A6J5UDW0 Uncharacterized protein9.6e-2248.46Show/hide
Query:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ
        MA +T SS LP+  L++++LA+ G+A A R+   K   DDKKQP+W +G+DG S LIPGIGR+  PP           D GS G   GS  G  P++   
Subjt:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ

Query:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP
        Y+PGGDD F+PNPG+EVPNP N  G   TP
Subjt:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP

A0A6J5X0W5 Uncharacterized protein7.3e-2248.46Show/hide
Query:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ
        MA +T SS LP+  L++++LA+ G+A A R+   K   DDKKQP+W +G+DG S LIPGIGR+ +PP           D GS G   GS  G  P++   
Subjt:  MAYRTISSLLPI--LIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPY----------DKGSFGEHAGS-YGSNPASSGQ

Query:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP
        Y+PGGDD F+PNPG+EVPNP N  G   TP
Subjt:  YIPGGDDNFIPNPGFEVPNPANIGGVKATP

SwissProt top hitse value%identityAlignment
P47925 Putative cell wall protein7.6e-0832.17Show/hide
Query:  SSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYD-GVSVLIPGIGRITLPPYDKGSF------------GEHAGSY-GSNPASSGQYIPGG
        S+++ +++ ++L    + +  R+  +     D K P +LV  +   ++LIPG+GR  LPP  K  F            G    SY G   A     +PGG
Subjt:  SSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYD-GVSVLIPGIGRITLPPYDKGSF------------GEHAGSY-GSNPASSGQYIPGG

Query:  DDNFIPNPGFEVPNP
        DD  +PNPGFE P P
Subjt:  DDNFIPNPGFEVPNP

Arabidopsis top hitse value%identityAlignment
AT2G20870.1 cell wall protein precursor, putative5.4e-0932.17Show/hide
Query:  SSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYD-GVSVLIPGIGRITLPPYDKGSF------------GEHAGSY-GSNPASSGQYIPGG
        S+++ +++ ++L    + +  R+  +     D K P +LV  +   ++LIPG+GR  LPP  K  F            G    SY G   A     +PGG
Subjt:  SSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYD-GVSVLIPGIGRITLPPYDKGSF------------GEHAGSY-GSNPASSGQYIPGG

Query:  DDNFIPNPGFEVPNP
        DD  +PNPGFE P P
Subjt:  DDNFIPNPGFEVPNP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTACAGAACCATTTCTTCTCTGCTTCCTATCCTCATCATCATCATTCTTGCAGTAGCTGGAGAAGCAGCTGCAGCTCGCAATGCTCGGGAAAAGTCCAGCATTGA
TGATAAGAAACAGCCCCAATGGCTGGTGGGATATGATGGGGTGAGCGTGCTCATTCCTGGCATTGGGCGCATCACACTGCCACCATATGACAAAGGCAGCTTTGGAGAGC
ATGCAGGTTCATATGGCAGTAACCCAGCTTCAAGTGGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAAACCCTGCCAATATT
GGTGGTGTTAAAGCAACACCCCATCCT
mRNA sequenceShow/hide mRNA sequence
ATGGCTTACAGAACCATTTCTTCTCTGCTTCCTATCCTCATCATCATCATTCTTGCAGTAGCTGGAGAAGCAGCTGCAGCTCGCAATGCTCGGGAAAAGTCCAGCATTGA
TGATAAGAAACAGCCCCAATGGCTGGTGGGATATGATGGGGTGAGCGTGCTCATTCCTGGCATTGGGCGCATCACACTGCCACCATATGACAAAGGCAGCTTTGGAGAGC
ATGCAGGTTCATATGGCAGTAACCCAGCTTCAAGTGGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATTTGAGGTGCCAAACCCTGCCAATATT
GGTGGTGTTAAAGCAACACCCCATCCT
Protein sequenceShow/hide protein sequence
MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGRITLPPYDKGSFGEHAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPANI
GGVKATPHP