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MS004868 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004868
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionB box-type domain-containing protein
Genome locationscaffold176:1099808..1100161
RNA-Seq ExpressionMS004868
SyntenyMS004868
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000315 - B-box-type zinc finger


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042428.1 Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]1.4e-3863.31Show/hide
Query:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT
        MC+GV EG +         H  GG RQ P +           MCELCNSKASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLTQKYLM T
Subjt:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT

Query:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL
        STE+LLPTI+  T+    +NN N N CCS+ML  PFLFL
Subjt:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL

KAG6570870.1 B-box domain protein 31, partial [Cucurbita argyrosperma subsp. sororia]3.1e-3562.12Show/hide
Query:  MCKGVGEGRNHAHGGFRQFPP------------VMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPT
        MC+GV E R  +HGG R+F              VMCELC+S+ASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLT KYLM TST++LLPT
Subjt:  MCKGVGEGRNHAHGGFRQFPP------------VMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPT

Query:  ILTSTQQTH--SNNANPNKCCSLMLTTPFLFL
        I+T  Q  +  ++N N + CCS+ L TP LFL
Subjt:  ILTSTQQTH--SNNANPNKCCSLMLTTPFLFL

KGN63276.1 hypothetical protein Csa_022167 [Cucumis sativus]7.9e-3966.92Show/hide
Query:  MCKGVGEGRN-HAHG--GFRQFP-----------PVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLL
        MC+GV EG + HAHG  G RQ P            VMCELCNSKASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLTQKYLM TSTE+LL
Subjt:  MCKGVGEGRN-HAHG--GFRQFP-----------PVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLL

Query:  PTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL
        PTI+   +    +NN N N CCS+M   PFLFL
Subjt:  PTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL

TYK13446.1 Zinc finger protein CONSTANS-LIKE 14 [Cucumis melo var. makuwa]1.4e-3863.31Show/hide
Query:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT
        MC+GV EG +         H  GG RQ P +           MCELCNSKASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLTQKYLM T
Subjt:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT

Query:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL
        STE+LLPTI+  T+    +NN N N CCS+ML  PFLFL
Subjt:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL

XP_022986418.1 B-box domain protein 30-like [Cucurbita maxima]6.3e-3663.64Show/hide
Query:  MCKGVGEGRNHAHGGFRQFPP------------VMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPT
        MC+GV E R  +HGG R F              VMCELCNS+ASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLT KYLM TST++LLPT
Subjt:  MCKGVGEGRNHAHGGFRQFPP------------VMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPT

Query:  ILTSTQQTH--SNNANPNKCCSLMLTTPFLFL
        I+T  Q  +  + N N N CCS+ L TP LFL
Subjt:  ILTSTQQTH--SNNANPNKCCSLMLTTPFLFL

TrEMBL top hitse value%identityAlignment
A0A0A0LTB0 B box-type domain-containing protein3.8e-3966.92Show/hide
Query:  MCKGVGEGRN-HAHG--GFRQFP-----------PVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLL
        MC+GV EG + HAHG  G RQ P            VMCELCNSKASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLTQKYLM TSTE+LL
Subjt:  MCKGVGEGRN-HAHG--GFRQFP-----------PVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLL

Query:  PTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL
        PTI+   +    +NN N N CCS+M   PFLFL
Subjt:  PTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL

A0A5A7TI11 Zinc finger protein CONSTANS-LIKE 146.5e-3963.31Show/hide
Query:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT
        MC+GV EG +         H  GG RQ P +           MCELCNSKASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLTQKYLM T
Subjt:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT

Query:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL
        STE+LLPTI+  T+    +NN N N CCS+ML  PFLFL
Subjt:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL

A0A5D2M0Y9 B box-type domain-containing protein3.8e-3159.5Show/hide
Query:  MCKGVGEGRNHAHGGFRQ---FPPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTILTSTQQTH
        MCKG+ +G N +    +Q      V CELCNS+ASLYCQADDAYLCRKCDKWVH ANFLA RHIRC LC TCQ+LTQ+YL+  S E++LPT++TS++ +H
Subjt:  MCKGVGEGRNHAHGGFRQ---FPPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTILTSTQQTH

Query:  SNNANPNKCCSLMLTTPFLFL
          N++     S  L TPFLFL
Subjt:  SNNANPNKCCSLMLTTPFLFL

A0A5D3CSP7 Zinc finger protein CONSTANS-LIKE 146.5e-3963.31Show/hide
Query:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT
        MC+GV EG +         H  GG RQ P +           MCELCNSKASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLTQKYLM T
Subjt:  MCKGVGEGRN---------HAHGGFRQFPPV-----------MCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT

Query:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL
        STE+LLPTI+  T+    +NN N N CCS+ML  PFLFL
Subjt:  STELLLPTILTSTQQTH-SNNANPNKCCSLMLTTPFLFL

A0A6J1JGF8 B-box domain protein 30-like3.0e-3663.64Show/hide
Query:  MCKGVGEGRNHAHGGFRQFPP------------VMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPT
        MC+GV E R  +HGG R F              VMCELCNS+ASLYCQADDAYLCRKCDKWVH ANFLA RHIRCILC  CQNLT KYLM TST++LLPT
Subjt:  MCKGVGEGRNHAHGGFRQFPP------------VMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPT

Query:  ILTSTQQTH--SNNANPNKCCSLMLTTPFLFL
        I+T  Q  +  + N N N CCS+ L TP LFL
Subjt:  ILTSTQQTH--SNNANPNKCCSLMLTTPFLFL

SwissProt top hitse value%identityAlignment
Q1G3I2 B-box domain protein 302.5e-1943.12Show/hide
Query:  MCKGV--GEGRNHAHGGFRQF------PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTI-LT
        MC+G    E R   +GG ++        PV CELC   A++YC+AD A+LCRKCD+WVH ANFLA+RH+R ++C TC+ LT++ L+  +  ++LP I + 
Subjt:  MCKGV--GEGRNHAHGGFRQF------PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTI-LT

Query:  STQQTHSNN
        +  + HS++
Subjt:  STQQTHSNN

Q96502 Zinc finger protein CONSTANS-LIKE 22.2e-0745.45Show/hide
Query:  CELCNSKA-SLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYL
        C+ C S A ++YC+AD AYLC  CD  VH AN +A RH R  +C++C++    +L
Subjt:  CELCNSKA-SLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYL

Q9C9F4 Putative zinc finger protein At1g681902.9e-0750Show/hide
Query:  MCELCNS-KASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQN
        +CE C + +A +YC AD A LC  CD  VH AN L+ RH+R +LC +C+N
Subjt:  MCELCNS-KASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQN

Q9LJB7 B-box zinc finger protein 321.5e-1137.65Show/hide
Query:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTILTSTQQTHSNNANPNKCCS
        CELC ++A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LTQ ++         P +    + T  + ++ + CCS
Subjt:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTILTSTQQTHSNNANPNKCCS

Q9LRM4 B-box domain protein 315.0e-2042.06Show/hide
Query:  MCKGVG--EGRNHAHGGFRQF-----PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT-STELLLPTILTS
        MC+G+   E R    GG R        PV CELC+  AS++C+AD A+LCRKCD+WVH ANFLA RH+R +LC +CQ LT++ L+      ++LP++ T 
Subjt:  MCKGVG--EGRNHAHGGFRQF-----PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT-STELLLPTILTS

Query:  TQQTHSNNANPNKCCSLMLTTPFLFL
         + T  N +  +         PF+FL
Subjt:  TQQTHSNNANPNKCCSLMLTTPFLFL

Arabidopsis top hitse value%identityAlignment
AT3G21150.1 B-box 321.0e-1237.65Show/hide
Query:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTILTSTQQTHSNNANPNKCCS
        CELC ++A L+C AD A+LCR CD   H +NFL  RH R ++C  C++LTQ ++         P +    + T  + ++ + CCS
Subjt:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTILTSTQQTHSNNANPNKCCS

AT3G21890.1 B-box type zinc finger family protein3.6e-2142.06Show/hide
Query:  MCKGVG--EGRNHAHGGFRQF-----PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT-STELLLPTILTS
        MC+G+   E R    GG R        PV CELC+  AS++C+AD A+LCRKCD+WVH ANFLA RH+R +LC +CQ LT++ L+      ++LP++ T 
Subjt:  MCKGVG--EGRNHAHGGFRQF-----PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMAT-STELLLPTILTS

Query:  TQQTHSNNANPNKCCSLMLTTPFLFL
         + T  N +  +         PF+FL
Subjt:  TQQTHSNNANPNKCCSLMLTTPFLFL

AT4G15248.1 B-box type zinc finger family protein1.8e-2043.12Show/hide
Query:  MCKGV--GEGRNHAHGGFRQF------PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTI-LT
        MC+G    E R   +GG ++        PV CELC   A++YC+AD A+LCRKCD+WVH ANFLA+RH+R ++C TC+ LT++ L+  +  ++LP I + 
Subjt:  MCKGV--GEGRNHAHGGFRQF------PPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTI-LT

Query:  STQQTHSNN
        +  + HS++
Subjt:  STQQTHSNN

AT4G27310.1 B-box type zinc finger family protein5.2e-1256Show/hide
Query:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLT
        C+LCN  A +YC++D A LC  CD  VH ANFL  +H RC+LC  CQ+LT
Subjt:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLT

AT5G54470.1 B-box type zinc finger family protein9.7e-1154Show/hide
Query:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLT
        CELC   A +YC++D A LC  CD  VH ANFL  +H+RC+LC  CQ+ T
Subjt:  CELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAAAGGAGTGGGAGAGGGAAGAAACCACGCCCACGGCGGCTTCCGCCAGTTTCCGCCGGTGATGTGCGAGCTCTGCAACTCCAAGGCTTCCTTGTACTGCCAAGC
GGACGATGCGTATCTGTGTAGGAAATGCGACAAATGGGTTCATTGTGCTAATTTCTTGGCCCAGCGGCATATTAGGTGCATCCTCTGTAAGACTTGCCAAAACCTTACGC
AAAAGTACCTCATGGCAACTTCTACTGAGCTCCTCCTTCCCACCATCCTCACTTCCACCCAACAAACGCACTCTAACAATGCCAATCCTAACAAATGCTGTTCACTAATG
CTCACAACGCCTTTTCTCTTTTTG
mRNA sequenceShow/hide mRNA sequence
ATGTGTAAAGGAGTGGGAGAGGGAAGAAACCACGCCCACGGCGGCTTCCGCCAGTTTCCGCCGGTGATGTGCGAGCTCTGCAACTCCAAGGCTTCCTTGTACTGCCAAGC
GGACGATGCGTATCTGTGTAGGAAATGCGACAAATGGGTTCATTGTGCTAATTTCTTGGCCCAGCGGCATATTAGGTGCATCCTCTGTAAGACTTGCCAAAACCTTACGC
AAAAGTACCTCATGGCAACTTCTACTGAGCTCCTCCTTCCCACCATCCTCACTTCCACCCAACAAACGCACTCTAACAATGCCAATCCTAACAAATGCTGTTCACTAATG
CTCACAACGCCTTTTCTCTTTTTG
Protein sequenceShow/hide protein sequence
MCKGVGEGRNHAHGGFRQFPPVMCELCNSKASLYCQADDAYLCRKCDKWVHCANFLAQRHIRCILCKTCQNLTQKYLMATSTELLLPTILTSTQQTHSNNANPNKCCSLM
LTTPFLFL