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MS004879 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004879
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVascular-related unknown protein 1
Genome locationscaffold176:1161654..1162313
RNA-Seq ExpressionMS004879
SyntenyMS004879
Gene Ontology termsGO:0010089 - xylem development (biological process)
InterPro domainsIPR039280 - VASCULAR-RELATED UNKNOWN PROTEIN


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604852.1 Vascular-related unknown protein 1, partial [Cucurbita argyrosperma subsp. sororia]2.1e-3460.34Show/hide
Query:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT
        E SV SSI Q PHPLPS          ++S WTAY LDDPS  +DAYSL   TSSLLSDAASHAA          + HL IP KLSLKPK   +QFFVDT
Subjt:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT

Query:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        SLEDTASSPDNSPKVAD G    NNYRRKSSL  GR MGEK+  ++ +          YTDLK+RGLCLVPL++ ANYL
Subjt:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

KAG7034965.1 hypothetical protein SDJN02_01758, partial [Cucurbita argyrosperma subsp. argyrosperma]9.2e-3560.89Show/hide
Query:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT
        E SV SSI Q PHPLPS          ++S WTAY LDDPS  +DAYSL   TSSLLSDAASHAA          + HL IP KLSLKPK   +QFFVDT
Subjt:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT

Query:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        SLEDTASSPDNSPKVAD G    NNYRRKSSL  GR MGEK+  ++ +          YTDLK+RGLCLVPLS+ ANYL
Subjt:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

XP_022140677.1 uncharacterized protein LOC111011279 [Momordica charantia]1.4e-7597.48Show/hide
Query:  KENSVYSSIQIPHPLPSADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAHLNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLG
        KENSVYSSIQIPHPLPSADDSGWTAYLLDDP SDEDAYSLGVGTSSLLSDAASHAAAAHLNIPSKLSLKPKPKPSQFFVDTSLEDTASSP NSPKVADLG
Subjt:  KENSVYSSIQIPHPLPSADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAHLNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLG

Query:  ANNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYLP
        ANNNYRRKSSL  GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYLP
Subjt:  ANNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYLP

XP_022947988.1 vascular-related unknown protein 1-like [Cucurbita moschata]2.7e-3460.34Show/hide
Query:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT
        E SV SSI Q PHPLPS          ++S WTAY LDDPS  +DAYSL   +SSLLSDAASHAA          + HL IP KLSLKPK   +QFFVDT
Subjt:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT

Query:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        SLEDTASSPDNSPKVAD G    NNYRRKSSL  GR MGEK+  ++ +          YTDLK+RGLCLVPLS+ ANYL
Subjt:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

XP_023534015.1 vascular-related unknown protein 1 [Cucurbita pepo subsp. pepo]2.1e-3460.34Show/hide
Query:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT
        E SV SSI Q PHPLPS          ++S WTAY LDDPS  +DAYSL   +SSLLSDAASHAA          + HL IP KLSLKPK   +QFFVDT
Subjt:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT

Query:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        SLEDTASSPDNSPKVAD G    NNYRRKSSL  GR MGEK+  ++ +          YTDLK+RGLCLVPLS+ ANYL
Subjt:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

TrEMBL top hitse value%identityAlignment
A0A5A7TKT4 Uncharacterized protein4.6e-3260.34Show/hide
Query:  ENSVYSSI-QIPHPLP----SADDSGWTAYLLDDPSSDE-DAYSLGVGTSSLLSDAASHAAAA---------HLNIPSKLSLKPKPKPSQFFVDTSLEDT
        E SVYSS  Q PHPLP    SA +SGWTAY LD+PS D+ + Y     TSSLLSDAASHA AA         HL IP+KL L  KPK   FFVDTSLEDT
Subjt:  ENSVYSSI-QIPHPLP----SADDSGWTAYLLDDPSSDE-DAYSLGVGTSSLLSDAASHAAAA---------HLNIPSKLSLKPKPKPSQFFVDTSLEDT

Query:  ASSPDNSPKVAD-LGA--NNNYRRKSSLGRTMGEKFSINKSEEEINLEMGAA-YTDLKQRGLCLVPLSIFANYL
        ASSPDNSPKV D LG    N+YRRKSSLG   GEK+  ++   EI  +  A+ YTDLK+RGLCLVPLS+  NYL
Subjt:  ASSPDNSPKVAD-LGA--NNNYRRKSSLGRTMGEKFSINKSEEEINLEMGAA-YTDLKQRGLCLVPLSIFANYL

A0A5D3BK94 Uncharacterized protein4.6e-3260.12Show/hide
Query:  ENSVYSSI-QIPHPLP----SADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAA---------HLNIPSKLSLKPKPKPSQFFVDTSLEDTA
        E SVYSS  Q PHPLP    SA +SGWTAY LD+PS D+   +    TSSLLSDAASHA AA         HL IP+KL L  KPK   FFVDTSLEDTA
Subjt:  ENSVYSSI-QIPHPLP----SADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAA---------HLNIPSKLSLKPKPKPSQFFVDTSLEDTA

Query:  SSPDNSPKVAD-LGA--NNNYRRKSSLGRTMGEKFSINKSEEEINLEMGAA-YTDLKQRGLCLVPLSIFANYL
        SSPDNSPKV D LG    N+YRRKSSLG   GEK+  ++   EI  +  A+ YTDLK+RGLCLVPLS+  NYL
Subjt:  SSPDNSPKVAD-LGA--NNNYRRKSSLGRTMGEKFSINKSEEEINLEMGAA-YTDLKQRGLCLVPLSIFANYL

A0A6J1CHQ3 uncharacterized protein LOC1110112796.8e-7697.48Show/hide
Query:  KENSVYSSIQIPHPLPSADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAHLNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLG
        KENSVYSSIQIPHPLPSADDSGWTAYLLDDP SDEDAYSLGVGTSSLLSDAASHAAAAHLNIPSKLSLKPKPKPSQFFVDTSLEDTASSP NSPKVADLG
Subjt:  KENSVYSSIQIPHPLPSADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAHLNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLG

Query:  ANNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYLP
        ANNNYRRKSSL  GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYLP
Subjt:  ANNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYLP

A0A6J1G847 Uncharacterized protein1.3e-3460.34Show/hide
Query:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT
        E SV SSI Q PHPLPS          ++S WTAY LDDPS  +DAYSL   +SSLLSDAASHAA          + HL IP KLSLKPK   +QFFVDT
Subjt:  ENSVYSSI-QIPHPLPS---------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDT

Query:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        SLEDTASSPDNSPKVAD G    NNYRRKSSL  GR MGEK+  ++ +          YTDLK+RGLCLVPLS+ ANYL
Subjt:  SLEDTASSPDNSPKVADLGA--NNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

A0A6J1I137 Uncharacterized protein1.7e-3461.02Show/hide
Query:  ENSVYSSI-QIPHPLPS------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDTSLE
        E SV SSI QIPHPLPS      A++S WTAY LDDPS  +DAYSL   TSSLLSDAASHAA          + HL IP KLSLKPK   +QFFVDTSLE
Subjt:  ENSVYSSI-QIPHPLPS------ADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAA----------AAHLNIPSKLSLKPKPKPSQFFVDTSLE

Query:  DTASSPDNSPKVADLG---ANNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        DTASSPDNSPKVAD G    NN+ R+KSSL  GR MGEK+  ++ +          Y DLK+RGLCLVPLS+ ANYL
Subjt:  DTASSPDNSPKVADLG---ANNNYRRKSSL--GRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

SwissProt top hitse value%identityAlignment
Q5BPG5 Vascular-related unknown protein 45.5e-0633.11Show/hide
Query:  DDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAH-LNIP----SKLSLK-PKPKPSQFFVDTSLEDTASSPDNSPKVADLG--ANNNYRRKSS
        ++S WT Y  D   +      +G  +SS +SDAAS  A    LN+     S L +K  + +   F     LEDTASSP  SP V  +    +NN R    
Subjt:  DDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAH-LNIP----SKLSLK-PKPKPSQFFVDTSLEDTASSPDNSPKVADLG--ANNNYRRKSS

Query:  LGRTMGEKFSINKSEEEINL--EMGAAYTDLKQRGLCLVPLSIFANYL
        +         +   E+ ++     G    DLK++GLCLVPLS+  N+L
Subjt:  LGRTMGEKFSINKSEEEINL--EMGAAYTDLKQRGLCLVPLSIFANYL

Q9C6I7 Vascular-related unknown protein 26.7e-0437.5Show/hide
Query:  EDTASSPDNSPKVADL--GANNNYRRKSSLGRTMGEKFSI-----NKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        EDTASSP N  K+  +   AN+N R   ++     E+        +K +E +N E  A   +LK+RGLC+VPLS+ +N++
Subjt:  EDTASSPDNSPKVADL--GANNNYRRKSSLGRTMGEKFSI-----NKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

Q9LSZ3 Vascular-related unknown protein 15.3e-0931.79Show/hide
Query:  DDSGWTAYLLD------------DPSSDEDAYSLGVGTSSLLSDAASHAAAAH---LNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLGANN
        ++SGWT YL D            +   D+ +YSL   ++SL+SDAA+HA +     +N P+KL    + +  +   D SLEDTASSP NSPKV+      
Subjt:  DDSGWTAYLLD------------DPSSDEDAYSLGVGTSSLLSDAASHAAAAH---LNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLGANN

Query:  NYRRKSS--------LGRTMG-------------EKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANY
           RK          +G   G             +K ++ ++  + N        DL+ RGLC+VP+S+ AN+
Subjt:  NYRRKSS--------LGRTMG-------------EKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANY

Arabidopsis top hitse value%identityAlignment
AT1G50930.1 unknown protein4.8e-0537.5Show/hide
Query:  EDTASSPDNSPKVADL--GANNNYRRKSSLGRTMGEKFSI-----NKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL
        EDTASSP N  K+  +   AN+N R   ++     E+        +K +E +N E  A   +LK+RGLC+VPLS+ +N++
Subjt:  EDTASSPDNSPKVADL--GANNNYRRKSSLGRTMGEKFSI-----NKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYL

AT3G21710.1 unknown protein3.0e-0740.43Show/hide
Query:  DDSGWTAYLLD------------DPSSDEDAYSLGVGTSSLLSDAASHAAAAH---LNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVA
        ++SGWT YL D            +   D+ +YSL   ++SL+SDAA+HA +     +N P+KL    + +  +   D SLEDTASSP NSPKV+
Subjt:  DDSGWTAYLLD------------DPSSDEDAYSLGVGTSSLLSDAASHAAAAH---LNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVA

AT3G21710.2 unknown protein3.8e-1031.79Show/hide
Query:  DDSGWTAYLLD------------DPSSDEDAYSLGVGTSSLLSDAASHAAAAH---LNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLGANN
        ++SGWT YL D            +   D+ +YSL   ++SL+SDAA+HA +     +N P+KL    + +  +   D SLEDTASSP NSPKV+      
Subjt:  DDSGWTAYLLD------------DPSSDEDAYSLGVGTSSLLSDAASHAAAAH---LNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLGANN

Query:  NYRRKSS--------LGRTMG-------------EKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANY
           RK          +G   G             +K ++ ++  + N        DL+ RGLC+VP+S+ AN+
Subjt:  NYRRKSS--------LGRTMG-------------EKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANY

AT5G54790.1 unknown protein3.9e-0733.11Show/hide
Query:  DDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAH-LNIP----SKLSLK-PKPKPSQFFVDTSLEDTASSPDNSPKVADLG--ANNNYRRKSS
        ++S WT Y  D   +      +G  +SS +SDAAS  A    LN+     S L +K  + +   F     LEDTASSP  SP V  +    +NN R    
Subjt:  DDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAH-LNIP----SKLSLK-PKPKPSQFFVDTSLEDTASSPDNSPKVADLG--ANNNYRRKSS

Query:  LGRTMGEKFSINKSEEEINL--EMGAAYTDLKQRGLCLVPLSIFANYL
        +         +   E+ ++     G    DLK++GLCLVPLS+  N+L
Subjt:  LGRTMGEKFSINKSEEEINL--EMGAAYTDLKQRGLCLVPLSIFANYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAGGAGAATTCGGTTTATTCATCCATCCAAATCCCGCACCCATTGCCTTCCGCCGACGACAGCGGCTGGACCGCCTATTTGCTCGACGACCCCTCCTCCGACGAAGACGC
CTACAGCCTCGGAGTCGGAACCTCCTCCCTGCTCTCCGACGCCGCTTCTCACGCCGCCGCCGCACACCTCAACATTCCCAGCAAATTGAGTCTCAAGCCAAAGCCAAAGC
CATCTCAATTTTTTGTTGATACTTCTCTCGAAGATACTGCCAGTTCCCCTGACAATAGCCCCAAGGTTGCTGATTTGGGTGCCAACAATAATTATCGAAGAAAGAGTTCT
CTGGGGAGGACGATGGGAGAGAAATTTAGTATTAATAAATCAGAAGAAGAAATCAATTTGGAGATGGGTGCTGCATATACAGACTTGAAACAAAGAGGCCTGTGCTTGGT
TCCTCTGTCCATCTTCGCCAACTACTTGCCC
mRNA sequenceShow/hide mRNA sequence
AAGGAGAATTCGGTTTATTCATCCATCCAAATCCCGCACCCATTGCCTTCCGCCGACGACAGCGGCTGGACCGCCTATTTGCTCGACGACCCCTCCTCCGACGAAGACGC
CTACAGCCTCGGAGTCGGAACCTCCTCCCTGCTCTCCGACGCCGCTTCTCACGCCGCCGCCGCACACCTCAACATTCCCAGCAAATTGAGTCTCAAGCCAAAGCCAAAGC
CATCTCAATTTTTTGTTGATACTTCTCTCGAAGATACTGCCAGTTCCCCTGACAATAGCCCCAAGGTTGCTGATTTGGGTGCCAACAATAATTATCGAAGAAAGAGTTCT
CTGGGGAGGACGATGGGAGAGAAATTTAGTATTAATAAATCAGAAGAAGAAATCAATTTGGAGATGGGTGCTGCATATACAGACTTGAAACAAAGAGGCCTGTGCTTGGT
TCCTCTGTCCATCTTCGCCAACTACTTGCCC
Protein sequenceShow/hide protein sequence
KENSVYSSIQIPHPLPSADDSGWTAYLLDDPSSDEDAYSLGVGTSSLLSDAASHAAAAHLNIPSKLSLKPKPKPSQFFVDTSLEDTASSPDNSPKVADLGANNNYRRKSS
LGRTMGEKFSINKSEEEINLEMGAAYTDLKQRGLCLVPLSIFANYLP