; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004886 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004886
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionhigh mobility group B protein 3-like
Genome locationscaffold176:1208406..1209431
RNA-Seq ExpressionMS004886
SyntenyMS004886
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022140698.1 high mobility group B protein 3-like [Momordica charantia]1.2e-4786.92Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNCC
        ML QRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP               AEKAPYAEKALSRKTEYVIALEAYKKTLNCC
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNCC

Query:  ADAEAAMPTESQKSTSEVHDDADQEASSSS
        ADAEAAMPTESQKSTSEVHDD DQEASSSS
Subjt:  ADAEAAMPTESQKSTSEVHDDADQEASSSS

XP_022947100.1 high mobility group B protein 3-like [Cucurbita moschata]7.2e-3773.48Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-
        ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP               AEKAPYAEK+L RK EY IALE YKK LNC 
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-

Query:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS
          A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS

XP_022971125.1 high mobility group B protein 3-like [Cucurbita maxima]5.5e-3773.48Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-
        ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP               AEKAPYAEK+L RK EY IALE YKK LNC 
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-

Query:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS
          A+AE  + TESQKSTS+V DDA+QEASSSS
Subjt:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS

XP_023533147.1 high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]2.5e-3774.24Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-
        ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP               AEKAPYAEK+L RK EY IALE YKK LNC 
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-

Query:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS
          A+AE  M TESQKSTS+V DDA+QEASSSS
Subjt:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS

XP_038902242.1 high mobility group B protein 1-like [Benincasa hispida]7.0e-4076.52Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNCC
        ML QRK EMKSTKS K+ KKDQNAPKRPATAFF+FMEEFRKTFKE+FPDAKAGP                EKAPYAEKAL RK EY IALEAYKK LNCC
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNCC

Query:  ADAEA--AMPTESQKSTSEVHDDADQEASSSS
        ADAEA   MPTESQKSTSEVHDDA+QEASSSS
Subjt:  ADAEA--AMPTESQKSTSEVHDDADQEASSSS

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X18.3e-3164.75Show/hide
Query:  LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA-----------------------EKAPYAEKALSRKTEYVIALEAY
        L QRKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP                        EKAPYAEKAL RK EY IALEAY
Subjt:  LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA-----------------------EKAPYAEKALSRKTEYVIALEAY

Query:  KKTLNC--CADAEAAMPTESQKSTSEVHDDADQEASSSS
        K   NC   A+ E  MPTESQKSTSEV+DD +QEASSSS
Subjt:  KKTLNC--CADAEAAMPTESQKSTSEVHDDADQEASSSS

A0A1S3C2L9 high mobility group B protein 1-like isoform X23.4e-3269.47Show/hide
Query:  LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--
        L QRKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP               AEKAPYAEKAL RK EY IALEAYK   NC  
Subjt:  LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC--

Query:  CADAEAAMPTESQKSTSEVHDDADQEASSSS
         A+ E  MPTESQKSTSEV+DD +QEASSSS
Subjt:  CADAEAAMPTESQKSTSEVHDDADQEASSSS

A0A6J1CIL2 high mobility group B protein 3-like5.8e-4886.92Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNCC
        ML QRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP               AEKAPYAEKALSRKTEYVIALEAYKKTLNCC
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNCC

Query:  ADAEAAMPTESQKSTSEVHDDADQEASSSS
        ADAEAAMPTESQKSTSEVHDD DQEASSSS
Subjt:  ADAEAAMPTESQKSTSEVHDDADQEASSSS

A0A6J1G5W3 high mobility group B protein 3-like3.5e-3773.48Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-
        ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP               AEKAPYAEK+L RK EY IALE YKK LNC 
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-

Query:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS
          A+AE  M TESQKSTS+V DD +QEASSSS
Subjt:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS

A0A6J1I4V5 high mobility group B protein 3-like2.7e-3773.48Show/hide
Query:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-
        ML +RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP               AEKAPYAEK+L RK EY IALE YKK LNC 
Subjt:  MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGP---------------AEKAPYAEKALSRKTEYVIALEAYKKTLNC-

Query:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS
          A+AE  + TESQKSTS+V DDA+QEASSSS
Subjt:  -CADAEAAMPTESQKSTSEVHDDADQEASSSS

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 12.2e-1241.38Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA
        K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++AY K L   +D   
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA

Query:  AMPTESQKSTSEVHDD
            ES+KS SE++D+
Subjt:  AMPTESQKSTSEVHDD

O49596 High mobility group B protein 21.2e-1040.16Show/hide
Query:  LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCA
        L+  K   K     K+  KD N PKRPA+AFF+FME+FR+TFK++ P  K+                 +EKAPY  KA  RK EY   ++AY K L    
Subjt:  LNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCA

Query:  DAEAAMPTESQKSTSEVHDDADQEASS
        +       ES KS SEV+D+ D E  S
Subjt:  DAEAAMPTESQKSTSEVHDDADQEASS

P40619 HMG1/2-like protein4.4e-1347.15Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPD-------AKAG--------PAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA
        K +   TK  K   KD N PKRP +AFF+FME+FRKT+KEK P+        KAG         AEKAP+  KA  RK EY   L+AY K       A A
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPD-------AKAG--------PAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA

Query:  AMPTESQKSTSEVH-DDADQEAS
        A   ES KS SEV+ DD DQ+ S
Subjt:  AMPTESQKSTSEVH-DDADQEAS

P40620 HMG1/2-like protein2.1e-1041.51Show/hide
Query:  KDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVH
        KD N PKRP +AFF+FM +FR+ +K+  P+ K+  A               EKAPY ++AL +K EY I L+AY K L    D E      S KS SEV+
Subjt:  KDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPA---------------EKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVH

Query:  DDADQE
        D+ + E
Subjt:  DDADQE

P93047 High mobility group B protein 31.2e-1040.15Show/hide
Query:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT
        KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+                 +EKAPY  KA  RK EY   ++AY K 
Subjt:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT

Query:  LNCCADAEAAMPTESQKSTSEVHDDADQEASS
        L    +       ES KS SEV+D+ D E  S
Subjt:  LNCCADAEAAMPTESQKSTSEVHDDADQEASS

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B38.6e-1240.15Show/hide
Query:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT
        KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+                 +EKAPY  KA  RK EY   ++AY K 
Subjt:  KAEMKSTKSN---------KSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKT

Query:  LNCCADAEAAMPTESQKSTSEVHDDADQEASS
        L    +       ES KS SEV+D+ D E  S
Subjt:  LNCCADAEAAMPTESQKSTSEVHDDADQEASS

AT3G51880.1 high mobility group B11.6e-1341.38Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA
        K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++AY K L   +D   
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA

Query:  AMPTESQKSTSEVHDD
            ES+KS SE++D+
Subjt:  AMPTESQKSTSEVHDD

AT3G51880.2 high mobility group B11.6e-1341.38Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA
        K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++AY K L   +D   
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA

Query:  AMPTESQKSTSEVHDD
            ES+KS SE++D+
Subjt:  AMPTESQKSTSEVHDD

AT3G51880.3 high mobility group B11.6e-1341.38Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA
        K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++AY K L   +D   
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA

Query:  AMPTESQKSTSEVHDD
            ES+KS SE++D+
Subjt:  AMPTESQKSTSEVHDD

AT3G51880.4 high mobility group B11.6e-1341.38Show/hide
Query:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA
        K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA                 AEKAPY EKA  RK EY   ++AY K L   +D   
Subjt:  KAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKA---------------GPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEA

Query:  AMPTESQKSTSEVHDD
            ES+KS SE++D+
Subjt:  AMPTESQKSTSEVHDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAATCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTCATGGA
GGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAG
CTCTCGAGGCATACAAGAAAACCCTCAATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGATCAGGAA
GCTAGCTCTAGCTCT
mRNA sequenceShow/hide mRNA sequence
ATGCTGAATCAGAGAAAAGCCGAGATGAAATCTACGAAAAGCAATAAATCCATGAAGAAAGATCAGAATGCACCAAAACGTCCAGCCACAGCTTTCTTCATTTTCATGGA
GGAATTCAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGAAAAAGCTCCTTACGCTGAAAAAGCTCTTAGTAGGAAGACAGAGTATGTGATAG
CTCTCGAGGCATACAAGAAAACCCTCAATTGCTGTGCGGACGCTGAAGCTGCAATGCCAACAGAGTCACAGAAATCAACCTCTGAGGTCCATGATGATGCAGATCAGGAA
GCTAGCTCTAGCTCT
Protein sequenceShow/hide protein sequence
MLNQRKAEMKSTKSNKSMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAEKAPYAEKALSRKTEYVIALEAYKKTLNCCADAEAAMPTESQKSTSEVHDDADQE
ASSSS