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MS004888 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004888
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionThiF domain-containing protein
Genome locationscaffold176:1217680..1218069
RNA-Seq ExpressionMS004888
SyntenyMS004888
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON83836.1 hypothetical protein TorRG33x02_203870 [Trema orientale]3.7e-2957.25Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTV-QPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS
        MNRR R + +SS +RTEP+ KYLKPGALAQIRDSRISARS+R+ SL+QI     S  PSSP P+T  Q  +  +D FPC +GRV+GP C +RKKL A K+
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTV-QPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS

Query:  TWFPNPNLQTPTSDSTRDPILDVFNSDVAAH
          FP+ N  +P  D+  DPI+DVF++D+AAH
Subjt:  TWFPNPNLQTPTSDSTRDPILDVFNSDVAAH

XP_022944248.1 uncharacterized protein LOC111448755 [Cucurbita moschata]5.8e-4371.54Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST
        MNRRV+F  K  ANRTE +HKYLKPGALA+IRDSRISAR YR NSLSQIYLR  +   SSPL +  Q +ID +DDFP L+GRVYGPLCLKRKK + IKST
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST

Query:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH
        WFP+PNLQTPT+D + D I+D FNSDVAAH
Subjt:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH

XP_022986202.1 uncharacterized protein LOC111484017 [Cucurbita maxima]1.0e-4271.54Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST
        MNRRV+   K  ANRTE +HK+LKPGALA++RDSRISARSYR NSLSQI+LR  + L SSPL    Q +ID +DDFP L+GRVYGPLCLKRKKLA IK+T
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST

Query:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH
        WFP+PNLQTPT+D T D I+D FNSDVAAH
Subjt:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH

XP_023513131.1 uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo]2.1e-4574.62Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST
        MNRRV+F  K  ANRTE +HKYLKPGALA++RDSRISARSYR NSLSQIYLR  + L SSPL    Q +ID +DDFP LAGRVYGPLCLKRKK A IKST
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST

Query:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH
        WFP+PNLQTPT+D T +PI+D FNSDVAAH
Subjt:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH

XP_038902395.1 uncharacterized protein LOC120089036 [Benincasa hispida]4.6e-4873.85Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST
        M R+++F PK  A+RTE +HKYLKPGALAQ+RDS+ISA+ YR NSLSQIYLR  SPLPSSPL    Q +ID++DDFP LAGR YGP CLKRKKLAAIK+T
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST

Query:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH
        WFP+PNLQTPT+D TRDP++DVFNSDVAAH
Subjt:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH

TrEMBL top hitse value%identityAlignment
A0A2P5EE91 Uncharacterized protein1.8e-2957.25Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTV-QPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS
        MNRR R + +SS +RTEP+ KYLKPGALAQIRDSRISARS+R+ SL+QI     S  PSSP P+T  Q  +  +D FPC +GRV+GP C +RKKL A K+
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTV-QPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS

Query:  TWFPNPNLQTPTSDSTRDPILDVFNSDVAAH
          FP+ N  +P  D+  DPI+DVF++D+AAH
Subjt:  TWFPNPNLQTPTSDSTRDPILDVFNSDVAAH

A0A6J1FXV4 uncharacterized protein LOC1114487552.8e-4371.54Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST
        MNRRV+F  K  ANRTE +HKYLKPGALA+IRDSRISAR YR NSLSQIYLR  +   SSPL +  Q +ID +DDFP L+GRVYGPLCLKRKK + IKST
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST

Query:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH
        WFP+PNLQTPT+D + D I+D FNSDVAAH
Subjt:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH

A0A6J1J6X7 uncharacterized protein LOC1114840174.8e-4371.54Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST
        MNRRV+   K  ANRTE +HK+LKPGALA++RDSRISARSYR NSLSQI+LR  + L SSPL    Q +ID +DDFP L+GRVYGPLCLKRKKLA IK+T
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST

Query:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH
        WFP+PNLQTPT+D T D I+D FNSDVAAH
Subjt:  WFPNPNLQTPTSDSTRDPILDVFNSDVAAH

A0A6P3Z351 uncharacterized protein LOC1074089612.6e-2857.25Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST
        MNRR R   +SS NRTEP+ K+LKPGALAQIRDSRISARS+R+ SL QI   P    PSSP     QP  + +D FPC + R+YGP C +RKKL A KS 
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKST

Query:  WFPNPNLQTPTSDSTRDPILDVFNSD-VAAH
         FP+ N  +P  DS  DP++DVF++D VAAH
Subjt:  WFPNPNLQTPTSDSTRDPILDVFNSD-VAAH

W9RNW7 Uncharacterized protein3.4e-2857.25Show/hide
Query:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTV-QPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS
        MNRR R + +SS +RTEP+ KYLKPGALA+IRDSRISARS+R  +LSQI L P    PSSP P T  Q  + ++D FPC + R YGP C +RKKL A KS
Subjt:  MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTV-QPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS

Query:  TWFPNPNLQTPTSDSTRDPILDVFNSDVAAH
          FP+    +P  D+  DPI+DVF SD+AAH
Subjt:  TWFPNPNLQTPTSDSTRDPILDVFNSDVAAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G26960.1 unknown protein1.8e-1039.42Show/hide
Query:  LPKSSANRTEPYHKYLKPGALAQIRDSRI-SARSYRLNSLSQIYLRPVS-PLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKSTWF---
        + +S   R + +H+Y+KPGALAQIR++RI +ARS     L++    PV  P  SS  P    PQ   +D  P L  ++YGP  + RKKL   +S      
Subjt:  LPKSSANRTEPYHKYLKPGALAQIRDSRI-SARSYRLNSLSQIYLRPVS-PLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKSTWF---

Query:  PNPN
        P+PN
Subjt:  PNPN

AT5G54970.1 unknown protein1.0e-1339.84Show/hide
Query:  LPKSSANRTEPYHKYLKPGALAQIRDSRISARS----YRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS-TWF
        + KS A R++ +H+YLKPGALAQIR+SRI+ARS       +SLSQ+ + P+SP  +S        +   +D  P L  ++YGP   +RKKLAA +S +  
Subjt:  LPKSSANRTEPYHKYLKPGALAQIRDSRISARS----YRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKS-TWF

Query:  PNPNLQTPTSDSTRDPILDVFNSDVAAH
           N+  P +    +P     +SDV AH
Subjt:  PNPNLQTPTSDSTRDPILDVFNSDVAAH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGCAGGGTTCGATTCTTGCCTAAATCATCTGCAAATCGGACGGAACCATATCACAAGTACTTGAAGCCCGGTGCTCTAGCGCAAATCCGAGACTCGCGAATCAG
CGCCAGATCGTACCGCCTCAACTCCCTCTCTCAGATCTATCTCCGCCCTGTGTCTCCTCTGCCGTCTTCTCCTCTTCCCAATACCGTTCAACCGCAAATTGACTTGCTCG
ACGACTTCCCTTGCCTGGCTGGGAGGGTTTACGGCCCCTTGTGTCTTAAGAGGAAGAAGCTCGCCGCGATCAAGTCTACTTGGTTTCCTAATCCTAATTTGCAGACCCCA
ACTTCAGATTCGACTAGAGACCCGATTCTTGATGTGTTTAATAGCGATGTTGCTGCGCAT
mRNA sequenceShow/hide mRNA sequence
ATGAATCGCAGGGTTCGATTCTTGCCTAAATCATCTGCAAATCGGACGGAACCATATCACAAGTACTTGAAGCCCGGTGCTCTAGCGCAAATCCGAGACTCGCGAATCAG
CGCCAGATCGTACCGCCTCAACTCCCTCTCTCAGATCTATCTCCGCCCTGTGTCTCCTCTGCCGTCTTCTCCTCTTCCCAATACCGTTCAACCGCAAATTGACTTGCTCG
ACGACTTCCCTTGCCTGGCTGGGAGGGTTTACGGCCCCTTGTGTCTTAAGAGGAAGAAGCTCGCCGCGATCAAGTCTACTTGGTTTCCTAATCCTAATTTGCAGACCCCA
ACTTCAGATTCGACTAGAGACCCGATTCTTGATGTGTTTAATAGCGATGTTGCTGCGCAT
Protein sequenceShow/hide protein sequence
MNRRVRFLPKSSANRTEPYHKYLKPGALAQIRDSRISARSYRLNSLSQIYLRPVSPLPSSPLPNTVQPQIDLLDDFPCLAGRVYGPLCLKRKKLAAIKSTWFPNPNLQTP
TSDSTRDPILDVFNSDVAAH