; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004907 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004907
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionglycine-rich RNA-binding protein 4, mitochondrial-like
Genome locationscaffold176:1386207..1387781
RNA-Seq ExpressionMS004907
SyntenyMS004907
Gene Ontology termsGO:0006002 - fructose 6-phosphate metabolic process (biological process)
GO:0046835 - carbohydrate phosphorylation (biological process)
GO:0061615 - glycolytic process through fructose-6-phosphate (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003872 - 6-phosphofructokinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0047334 - diphosphate-fructose-6-phosphate 1-phosphotransferase activity (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034781.1 glycine-rich RNA-binding protein 3 [Cucumis melo var. makuwa]2.3e-5680.69Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDA
        MMSNTNT +L+AR+ LTNIQ+  L   CFCSQS+   SSSPSA +NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F NE+DA
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDA

Query:  QCAKDAMDGKARRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        QCAKDAMDGKARRPL+ISFAL+KVRGGPV VPRLSN+ N+VG++S
Subjt:  QCAKDAMDGKARRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

KAG7010748.1 Glycine-rich RNA-binding protein 4, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-5581.08Show/hide
Query:  MSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNE
        MSN NT M +ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTNE
Subjt:  MSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNE

Query:  DDAQCAKDAMDGKARRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        DDAQ AKDAMDGKARRPLRISFALDKVRGGPVV+PRLSN+ NV G++S
Subjt:  DDAQCAKDAMDGKARRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

XP_022140496.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Momordica charantia]1.8e-6997.92Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA
        MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA

Query:  KDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        KDAMDGKA   RPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
Subjt:  KDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

XP_022986397.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]2.5e-5580.13Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MMSN N  ML+ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        EDDAQ AKDAMDGKA   RPLRISFALDKVRGGPVVVPRLSN+ NV+G++S
Subjt:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

XP_023512965.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]2.1e-5479.47Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MMSNTNT M + RR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS+DERSLKDAFSS+GEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        EDDAQ AKDAMDGKA   RPLRISFALDKVRGGPVVVPRLSN+ NV G++S
Subjt:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

TrEMBL top hitse value%identityAlignment
A0A1S3C2R4 glycine-rich RNA-binding protein 3, mitochondrial2.3e-5478.91Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDA
        MMSNTNT +L+AR+ LTNIQ+  L   CFCSQS+   SSSPSA +NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F NE+DA
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDA

Query:  QCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        QCAKDAMDGKA   RPL+ISFAL+KVRGGPV VPRLSN+ N+VG++S
Subjt:  QCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

A0A5D3CH06 Glycine-rich RNA-binding protein 31.1e-5680.69Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDA
        MMSNTNT +L+AR+ LTNIQ+  L   CFCSQS+   SSSPSA +NKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFV+F NE+DA
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS---SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDA

Query:  QCAKDAMDGKARRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        QCAKDAMDGKARRPL+ISFAL+KVRGGPV VPRLSN+ N+VG++S
Subjt:  QCAKDAMDGKARRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

A0A6J1CG90 glycine-rich RNA-binding protein 4, mitochondrial-like8.6e-7097.92Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA
        MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCA

Query:  KDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        KDAMDGKA   RPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
Subjt:  KDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

A0A6J1FYH8 glycine-rich RNA-binding protein 4, mitochondrial-like1.5e-5378.81Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MMSN N  ML+ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        EDDAQ AKDAMDGKA   RPLRISFALDKVRGGPVV+PRLSN+ N+ G++S
Subjt:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

A0A6J1J7F1 glycine-rich RNA-binding protein 4, mitochondrial-like1.2e-5580.13Show/hide
Query:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN
        MMSN N  ML+ARR LTNIQ+  L   CFCSQSS       SSSPSA NNKLFVAGLSWS+DERSLKDAFSSFGEVTEVRI+YDKDSGRSRGFGFVNFTN
Subjt:  MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSS-------SSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTN

Query:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS
        EDDAQ AKDAMDGKA   RPLRISFALDKVRGGPVVVPRLSN+ NV+G++S
Subjt:  EDDAQCAKDAMDGKA--RRPLRISFALDKVRGGPVVVPRLSNVGNVVGQKS

SwissProt top hitse value%identityAlignment
P39697 40S ribosomal protein S19, mitochondrial1.3e-1451.25Show/hide
Query:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKARRPLRISFALDK
        ++ KL++ GLS   DE SLKDAFSSF  VTE R++ +K +GRSRG+GFVNF +ED A  A  AM+G+      IS  + K
Subjt:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKARRPLRISFALDK

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial8.2e-1742.72Show/hide
Query:  SQSSSSSPSAL-------NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGK--ARRPLRISFALDKV
        +Q S SSPS         ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A  A  A+DG+    R +++++A D+ 
Subjt:  SQSSSSSPSAL-------NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGK--ARRPLRISFALDKV

Query:  RGG
         GG
Subjt:  RGG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial3.7e-1752.44Show/hide
Query:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK
        +++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ ED A  A   MDGK    R +R++ A ++
Subjt:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial9.0e-1647.56Show/hide
Query:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK
        ++ KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK    R +R++ A D+
Subjt:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK

W8E7I1 RNA-binding protein 33.8e-1447.13Show/hide
Query:  SALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDKVRG
        S+   KLFV GL+++ DER+L+D FSSFG ++EV +V D+++ RSRGFGF+ FTN + A  A  AM+G++   R +R+  A    RG
Subjt:  SALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDKVRG

Arabidopsis top hitse value%identityAlignment
AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.1e-3565.91Show/hide
Query:  NTFMLVARRVLT----NIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAK
        N   L+ RRV      +I S     P FC+ SSS+SPS   +KLF+ GLSWS+DE+SLKDAFSSFGEV EVRI YDK SGRSRGFGFV+F  E DA  AK
Subjt:  NTFMLVARRVLT----NIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAK

Query:  DAMDGKA--RRPLRISFALDKVRGGPVVVPRL
        DAMDGK    RPLRISFAL++VRGGPVVVPRL
Subjt:  DAMDGKA--RRPLRISFALDKVRGGPVVVPRL

AT3G23830.1 glycine-rich RNA-binding protein 42.6e-1852.44Show/hide
Query:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK
        +++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ ED A  A   MDGK    R +R++ A ++
Subjt:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK

AT3G23830.2 glycine-rich RNA-binding protein 42.6e-1852.44Show/hide
Query:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK
        +++KLFV GLSW  D+ SLK AF+SFGEVTE  ++ D+++GRSRGFGFV+F+ ED A  A   MDGK    R +R++ A ++
Subjt:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDK

AT4G13850.4 glycine-rich RNA-binding protein 27.6e-1847.67Show/hide
Query:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDKVRGG
        ++ KLF+ GLSW  D+ SL+DAF+ FG+V + +++ D+++GRSRGFGFVNF +E  A  A   MDGK    R +R++ A D+  GG
Subjt:  LNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKA--RRPLRISFALDKVRGG

AT5G61030.1 glycine-rich RNA-binding protein 35.8e-1842.72Show/hide
Query:  SQSSSSSPSAL-------NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGK--ARRPLRISFALDKV
        +Q S SSPS         ++KLF+ G+++SMDE SL++AF+ +GEV + R++ D+++GRSRGFGFV FT+ + A  A  A+DG+    R +++++A D+ 
Subjt:  SQSSSSSPSAL-------NNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGK--ARRPLRISFALDKV

Query:  RGG
         GG
Subjt:  RGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGCAACACGAACACCTTCATGCTGGTTGCCAGAAGAGTTCTTACCAATATCCAGAGCCGAACTCTGAGATGCCCTTGCTTCTGTTCTCAATCCTCTTCGTCTTC
TCCTTCTGCGCTGAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCAATGGACGAGAGATCCTTGAAAGATGCGTTCTCTTCCTTTGGGGAGGTTACTGAAGTCAGAA
TAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTTACAAATGAAGATGATGCACAATGTGCGAAAGATGCAATGGACGGAAAGGCAAGGCGA
CCATTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGACCTGTTGTCGTTCCTCGACTTTCAAATGTCGGCAATGTTGTGGGCCAGAAATCT
mRNA sequenceShow/hide mRNA sequence
ATGATGAGCAACACGAACACCTTCATGCTGGTTGCCAGAAGAGTTCTTACCAATATCCAGAGCCGAACTCTGAGATGCCCTTGCTTCTGTTCTCAATCCTCTTCGTCTTC
TCCTTCTGCGCTGAACAATAAGCTCTTTGTTGCAGGGTTGTCGTGGTCAATGGACGAGAGATCCTTGAAAGATGCGTTCTCTTCCTTTGGGGAGGTTACTGAAGTCAGAA
TAGTGTATGATAAAGACTCAGGTCGATCCAGAGGCTTTGGATTTGTAAACTTTACAAATGAAGATGATGCACAATGTGCGAAAGATGCAATGGACGGAAAGGCAAGGCGA
CCATTGAGGATAAGCTTTGCCCTTGACAAGGTTCGTGGTGGACCTGTTGTCGTTCCTCGACTTTCAAATGTCGGCAATGTTGTGGGCCAGAAATCT
Protein sequenceShow/hide protein sequence
MMSNTNTFMLVARRVLTNIQSRTLRCPCFCSQSSSSSPSALNNKLFVAGLSWSMDERSLKDAFSSFGEVTEVRIVYDKDSGRSRGFGFVNFTNEDDAQCAKDAMDGKARR
PLRISFALDKVRGGPVVVPRLSNVGNVVGQKS