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MS004908 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004908
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal_L30 domain-containing protein
Genome locationscaffold176:1389766..1390221
RNA-Seq ExpressionMS004908
SyntenyMS004908
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]1.5e-5092.04Show/hide
Query:  IFEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPL
        I E+LDMNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQKVEQHK+LRPPL
Subjt:  IFEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPL

Query:  VVNHLPVPSSTSA
        VVNHLP PSS S+
Subjt:  VVNHLPVPSSTSA

XP_008455933.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo]4.1e-4892.52Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSA
         PSS SA
Subjt:  VPSSTSA

XP_022140468.1 uncharacterized protein LOC111011134 [Momordica charantia]1.6e-52100Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSAP
        VPSSTSAP
Subjt:  VPSSTSAP

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]3.1e-4894.39Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSA
         PSS SA
Subjt:  VPSSTSA

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]8.2e-4995.33Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSA
         PSS SA
Subjt:  VPSSTSA

TrEMBL top hitse value%identityAlignment
A0A1S3C214 50S ribosomal protein L302.0e-4892.52Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSA
         PSS SA
Subjt:  VPSSTSA

A0A5A7VAZ6 50S ribosomal protein L302.0e-4892.52Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQK+E+H+ALRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSA
         PSS SA
Subjt:  VPSSTSA

A0A6J1CI25 uncharacterized protein LOC1110111347.7e-53100Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSAP
        VPSSTSAP
Subjt:  VPSSTSAP

A0A6J1FUA4 uncharacterized protein LOC1114488481.5e-4894.39Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQKVEQH ALRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSA
         PSS SA
Subjt:  VPSSTSA

A0A6J1G641 uncharacterized protein LOC1114511212.6e-4893.46Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLP

Query:  VPSSTSA
         PSS S+
Subjt:  VPSSTSA

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L301.7e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L +   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE

A8ZV75 50S ribosomal protein L307.5e-0545.61Show/hide
Query:  SPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GMI++V  L+ VE
Subjt:  SPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE

C3PL27 50S ribosomal protein L301.3e-0442.59Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L +   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8FS51 50S ribosomal protein L309.8e-0548.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L +   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8NSX3 50S ribosomal protein L309.8e-0548.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L +   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein1.0e-3369.39Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNH
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ L +C+RTV+  N  ++RGMI QVKR+VVVETEEMY ARK+    HKALRPPLVV+H
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATTTTTGAGATCTTGGACATGAATGCCTTCAAGGCTTTCAAAGCGAATGTCCCAATTGCGTGGAGTCCTAATCTTTATATCACATTAGTCAGAGGGATGCCAGGAACAAG
GAGACTCCACAGACGTACTTTAGAGGCATTAAGGCTTGGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGATCCAACAGGTAAAGCGAT
TAGTAGTGGTTGAAACAGAAGAAATGTACAAAGCACGTAAACAGAAGGTGGAACAGCACAAGGCTCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGTTCCAAGTTCT
ACTTCTGCTCCT
mRNA sequenceShow/hide mRNA sequence
ATTTTTGAGATCTTGGACATGAATGCCTTCAAGGCTTTCAAAGCGAATGTCCCAATTGCGTGGAGTCCTAATCTTTATATCACATTAGTCAGAGGGATGCCAGGAACAAG
GAGACTCCACAGACGTACTTTAGAGGCATTAAGGCTTGGGAAGTGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTAGGGGAATGATCCAACAGGTAAAGCGAT
TAGTAGTGGTTGAAACAGAAGAAATGTACAAAGCACGTAAACAGAAGGTGGAACAGCACAAGGCTCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGTTCCAAGTTCT
ACTTCTGCTCCT
Protein sequenceShow/hide protein sequence
IFEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPSS
TSAP