; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004929 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004929
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear cap-binding protein subunit 2
Genome locationscaffold176:1475842..1478425
RNA-Seq ExpressionMS004929
SyntenyMS004929
Gene Ontology termsGO:0045292 - mRNA cis splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005846 - nuclear cap binding complex (cellular component)
GO:0000339 - RNA cap binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR027157 - Nuclear cap-binding protein subunit 2
IPR034148 - NCBP2, RNA recognition motif
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570919.1 Nuclear cap-binding protein subunit 2, partial [Cucurbita argyrosperma subsp. sororia]2.3e-11488.11Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DP+KLSVYRDRRFQGTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCFVLYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH
         DFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGS+P V+PQYGKHGG HG+G RHGRDYH RKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        ESSKRTSDY+SRRNPDHESRP+KNPRFRESGDSDEEDDDDRKQR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

XP_022140633.1 nuclear cap-binding protein subunit 2 [Momordica charantia]4.9e-12595.08Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE
        VDFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE

Query:  SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR
        SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR
Subjt:  SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR

XP_022943536.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita moschata]7.9e-11588.93Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DP+KLSVYRDRRFQGTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCFVLYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH
         DFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGSVP VIPQYGKHGG HG+G RHGRDYH RKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        ESSKRTSDY+SRRNPDHESRP+KNPRFRESGDSDEEDDDDRKQR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

XP_022986365.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima]3.5e-11588.52Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DP+KLSVYRDRRFQGTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCF LYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH
         DFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGS+P VIPQYGKHGG HG+GHRHGRDYH RKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        ESSKRTSDY+SRRNPDHESRP+KNPRFRESGDSDEEDDDDRKQR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

XP_038900343.1 nuclear cap-binding protein subunit 2 [Benincasa hispida]1.0e-11488.98Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DPTKLSVYRDRRF GTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCFVLYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDY-HRKRYRDDDHHAH
        VDFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGS+ PV+ QYGKHGG HGHGHRHGRDY HRKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDY-HRKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR
        ESSKRTSDYESRRNPDH+SRPEKNPRFRESGDSDEEDDDD+KQRR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR

TrEMBL top hitse value%identityAlignment
A0A1S3CLT9 Nuclear cap-binding protein subunit 25.5e-11488.11Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DPTKLSVYRDRRF G+QDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCFVLYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDY-HRKRYRDDDHHAH
        VDFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGS+ PV+ QYGKHGG HGHGHRHGRDY HRKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDY-HRKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        ESSKRTSDYESRRN ++ESRPEKNPRFRESGDSDEEDDDDRKQR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

A0A6J1CIF4 Nuclear cap-binding protein subunit 22.4e-12595.08Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE
        VDFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE

Query:  SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR
        SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR
Subjt:  SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR

A0A6J1FX36 Nuclear cap-binding protein subunit 23.8e-11588.93Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DP+KLSVYRDRRFQGTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCFVLYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH
         DFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGSVP VIPQYGKHGG HG+G RHGRDYH RKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        ESSKRTSDY+SRRNPDHESRP+KNPRFRESGDSDEEDDDDRKQR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

A0A6J1J7C7 Nuclear cap-binding protein subunit 21.7e-11588.52Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DP+KLSVYRDRRFQGTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCF LYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH
         DFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGS+P VIPQYGKHGG HG+GHRHGRDYH RKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        ESSKRTSDY+SRRNPDHESRP+KNPRFRESGDSDEEDDDDRKQR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

A0A6J1JFW0 Nuclear cap-binding protein subunit 24.2e-11488.52Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DP+KLSVYRDRRFQGTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKN+KTPCGFCF LYYSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH
         DFDWGFQDGRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLGS+P VIPQYGKHGG HG+GHRHGRDYH RKRYRDDD HAH
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYH-RKRYRDDDHHAH

Query:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        ESSKRTSDY+SRRNPDHESRP KNPRFRESGDSDEEDDDDRKQR
Subjt:  ESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

SwissProt top hitse value%identityAlignment
B1WC40 Nuclear cap-binding protein subunit 28.9e-4563.12Show/hide
Query:  KLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDF
        +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK  KT CGFCFV YYSR DAE+A++Y++GT LDDR IR D+
Subjt:  KLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDF

Query:  DWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKE
        D GF++GRQ+GRGRSGGQV            GGYGKL QK+
Subjt:  DWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKE

Q3ZBJ1 Nuclear cap-binding protein subunit 23.4e-4462.41Show/hide
Query:  KLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDF
        +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK  KT CGFCFV YYSR DAE+A++Y++GT LDDR IR D+
Subjt:  KLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDF

Query:  DWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKE
        D GF++GRQ+GRGRSGGQV            GGYGKL Q +
Subjt:  DWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKE

Q84L14 Nuclear cap-binding protein subunit 21.4e-8268.44Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        DPTKLS YRDRRF GTQ+E+E ALQ S+TVYVGNMSFYTTEEQ YELFSRAGEI+KIIMGLDKN+KTPCGFCF+LYYSREDAEDAVKY+SGT+LDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE
        VDFDWGF++GRQWGRGRSGGQV            GGYGK+VQKELEAQR+LVDYG     + PP   + G    G+G  +R+ RDY RKRYR+D+     
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHE

Query:  SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR
        SS+R  D E +R+       EKNPRFRE GDSDEEDDD  K+RR
Subjt:  SSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQRR

Q9CQ49 Nuclear cap-binding protein subunit 28.9e-4563.12Show/hide
Query:  KLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDF
        +LS YRD+ F+G  +E E  L+ S T+YVGN+SFYTTEEQ+YELFS++G+IKKIIMGLDK  KT CGFCFV YYSR DAE+A++Y++GT LDDR IR D+
Subjt:  KLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDF

Query:  DWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKE
        D GF++GRQ+GRGRSGGQV            GGYGKL QK+
Subjt:  DWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKE

Q9XFD1 Nuclear cap-binding protein subunit 25.7e-9272Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        +  KLS YRDRRF GTQ+EF+ AL+ S TVY+GN+SFYTTEEQ+YELFSRAGEIKKIIMGLDKNTKTPCGFCFVL+YSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIP-QYG---KHGGGHGHG--HRHGR-DYHRKRYRD
        VDFDWGFQ+GRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLG+ P   P  YG   + GG +G G  +RHGR DYHRKR RD
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIP-QYG---KHGGGHGHG--HRHGR-DYHRKRYRD

Query:  DDHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        DD +  ++S+R +D+ESRR+ D + RPEKNPRFRESGDSD++ +DDRK+R
Subjt:  DDHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-0832.91Show/hide
Query:  LQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVD
        ++   TVY+ N+    T E + EL++  GE+K+  +  DKN + P G   V+Y  R DA  A++  +  +LD RP++++
Subjt:  LQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVD

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.3e-0832.91Show/hide
Query:  LQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVD
        ++   TVY+ N+    T E + EL++  GE+K+  +  DKN + P G   V+Y  R DA  A++  +  +LD RP++++
Subjt:  LQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVD

AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein7.3e-1037.04Show/hide
Query:  IALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVD
        +A + S  ++V  +S YTT++ + +LFS  G+IK+  +  D  T+ P GF F+ + S +DA  A+K + G I+D R I V+
Subjt:  IALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVD

AT5G44200.1 CAP-binding protein 204.0e-9372Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        +  KLS YRDRRF GTQ+EF+ AL+ S TVY+GN+SFYTTEEQ+YELFSRAGEIKKIIMGLDKNTKTPCGFCFVL+YSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIP-QYG---KHGGGHGHG--HRHGR-DYHRKRYRD
        VDFDWGFQ+GRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLG+ P   P  YG   + GG +G G  +RHGR DYHRKR RD
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIP-QYG---KHGGGHGHG--HRHGR-DYHRKRYRD

Query:  DDHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        DD +  ++S+R +D+ESRR+ D + RPEKNPRFRESGDSD++ +DDRK+R
Subjt:  DDHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR

AT5G44200.2 CAP-binding protein 204.0e-9372Show/hide
Query:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR
        +  KLS YRDRRF GTQ+EF+ AL+ S TVY+GN+SFYTTEEQ+YELFSRAGEIKKIIMGLDKNTKTPCGFCFVL+YSRED EDAVKY+SGTILDDRPIR
Subjt:  DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIR

Query:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIP-QYG---KHGGGHGHG--HRHGR-DYHRKRYRD
        VDFDWGFQ+GRQWGRGRSGGQV            GGYGKLVQKELEAQRQLVDYGTGSLG+ P   P  YG   + GG +G G  +RHGR DYHRKR RD
Subjt:  VDFDWGFQDGRQWGRGRSGGQV-----------LGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIP-QYG---KHGGGHGHG--HRHGR-DYHRKRYRD

Query:  DDHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR
        DD +  ++S+R +D+ESRR+ D + RPEKNPRFRESGDSD++ +DDRK+R
Subjt:  DDHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GACCCGACAAAGCTATCTGTATATCGGGATAGAAGATTTCAGGGAACCCAAGATGAATTTGAAATTGCACTTCAGACTTCAATCACCGTTTATGTGGGAAATATGTCCTT
TTATACAACAGAAGAGCAAGTATATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATACGAAAACACCCTGTGGCTTTTGTTTTG
TCCTATACTATTCTCGGGAAGATGCAGAGGATGCTGTGAAATATATGAGTGGAACAATTCTTGATGATCGTCCTATCCGTGTGGATTTTGATTGGGGGTTTCAGGATGGC
AGGCAATGGGGTCGTGGTCGAAGTGGTGGTCAGGTACTAGGTGGCTATGGAAAGTTGGTCCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACCGGTTC
ACTGGGCTCTGTGCCGCCAGTGATACCTCAGTATGGAAAACACGGTGGAGGCCATGGACATGGGCATCGGCATGGTAGAGATTACCATCGTAAGCGCTACCGAGATGATG
ATCACCATGCCCATGAAAGCTCTAAGAGAACGTCAGATTATGAATCTAGGAGGAACCCTGATCATGAATCCAGACCGGAGAAGAATCCGAGGTTTCGGGAGAGTGGCGAT
TCTGATGAAGAAGATGACGATGACCGAAAGCAGCGGCGC
mRNA sequenceShow/hide mRNA sequence
GACCCGACAAAGCTATCTGTATATCGGGATAGAAGATTTCAGGGAACCCAAGATGAATTTGAAATTGCACTTCAGACTTCAATCACCGTTTATGTGGGAAATATGTCCTT
TTATACAACAGAAGAGCAAGTATATGAGCTTTTTTCTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATACGAAAACACCCTGTGGCTTTTGTTTTG
TCCTATACTATTCTCGGGAAGATGCAGAGGATGCTGTGAAATATATGAGTGGAACAATTCTTGATGATCGTCCTATCCGTGTGGATTTTGATTGGGGGTTTCAGGATGGC
AGGCAATGGGGTCGTGGTCGAAGTGGTGGTCAGGTACTAGGTGGCTATGGAAAGTTGGTCCAGAAAGAGTTAGAAGCACAGAGGCAGCTTGTGGATTATGGTACCGGTTC
ACTGGGCTCTGTGCCGCCAGTGATACCTCAGTATGGAAAACACGGTGGAGGCCATGGACATGGGCATCGGCATGGTAGAGATTACCATCGTAAGCGCTACCGAGATGATG
ATCACCATGCCCATGAAAGCTCTAAGAGAACGTCAGATTATGAATCTAGGAGGAACCCTGATCATGAATCCAGACCGGAGAAGAATCCGAGGTTTCGGGAGAGTGGCGAT
TCTGATGAAGAAGATGACGATGACCGAAAGCAGCGGCGC
Protein sequenceShow/hide protein sequence
DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDFDWGFQDG
RQWGRGRSGGQVLGGYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDYHRKRYRDDDHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGD
SDEEDDDDRKQRR