CuGenDBv2

Gene ID	MS004949
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	SAM domain-containing protein
Genome location	scaffold176:1656210..1657008
RNA-Seq Expression	MS004949
Synteny	MS004949
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001660 - Sterile alpha motif domain IPR013761 - Sterile alpha motif/pointed domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA3458504.1 SAM_2 domain-containing protein [Gossypium australe]

3.4e-55

97.22

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Query:  QDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKRNRQSR
        QDVG+WLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQIL+FIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLS+VFLKVAKRNRQSR
Subjt:  QDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKRNRQSR

Query:  VVSLKLEP
        VVSLKLEP
Subjt:  VVSLKLEP

XP_004140005.1 uncharacterized protein LOC101220276 isoform X1 [Cucumis sativus]

1.5e-55

94.69

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLG YRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

XP_012081442.1 uncharacterized protein LOC105641496 [Jatropha curcas]

3.4e-55

93.81

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLS+VF+KVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

XP_022140752.1 uncharacterized protein LOC111011338 [Momordica charantia]

5.2e-56

95.58

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

XP_022947536.1 uncharacterized protein LOC111451372 [Cucurbita moschata]

5.2e-56

95.58

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT3 SAM domain-containing protein

7.4e-56

94.69

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLG YRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

A0A251JM86 SAM domain-containing protein

1.6e-55

93.81

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLS+VF+KVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

A0A6J1CHY9 uncharacterized protein LOC111011338

2.5e-56

95.58

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

A0A6J1G6Q2 uncharacterized protein LOC111451372

2.5e-56

95.58

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

A0A6J1I147 uncharacterized protein LOC111469897

2.5e-56

95.58

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLEP
        NRQSRVVSLKLEP
Subjt:  NRQSRVVSLKLEP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G07760.1 Sterile alpha motif (SAM) domain-containing protein

3.4e-53

86.61

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVG WLEEINLG YRQIFKENGVNGEYLE MS+FTTEQIL FIRR HMKWGDFITLCKELRRIKVACLKGEQ+VRRPWWAPSCLS+VF+K AKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLE
        NRQSRVVSLKLE
Subjt:  NRQSRVVSLKLE

AT3G07760.2 Sterile alpha motif (SAM) domain-containing protein

3.4e-53

86.61

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Query:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR
        +I+  +DVG WLEEINLG YRQIFKENGVNGEYLE MS+FTTEQIL FIRR HMKWGDFITLCKELRRIKVACLKGEQ+VRRPWWAPSCLS+VF+K AKR
Subjt:  YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKR

Query:  NRQSRVVSLKLE
        NRQSRVVSLKLE
Subjt:  NRQSRVVSLKLE

Sequences

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CDS sequence

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TACATTTTTTTTTATCAGGATGTTGGTTTGTGGTTGGAAGAGATAAATCTTGGAAGCTATCGTCAGATCTTTAAAGAAAATGGGGTCAATGGGGAGTATCTTGAAGGCAT
GTCCATGTTCACAACTGAGCAGATTCTAAGGTTTATTAGACGATGCCACATGAAATGGGGGGACTTCATCACACTATGCAAGGAACTCCGACGAATTAAAGTGGCTTGCT
TGAAAGGGGAGCAAAAGGTACGTCGGCCGTGGTGGGCACCATCGTGCCTCTCTATGGTGTTTCTCAAGGTGGCGAAGCGTAACAGACAATCTCGAGTTGTTTCCTTGAAG
CTGGAGCCA

mRNA sequence

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Protein sequence

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YIFFYQDVGLWLEEINLGSYRQIFKENGVNGEYLEGMSMFTTEQILRFIRRCHMKWGDFITLCKELRRIKVACLKGEQKVRRPWWAPSCLSMVFLKVAKRNRQSRVVSLK
LEP

MS004949 (gene) of Bitter gourd (TR) v1 genome