CuGenDBv2

Gene ID	MS004952
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box protein SNE-like
Genome location	scaffold176:1673803..1674264
RNA-Seq Expression	MS004952
Synteny	MS004952
Gene Ontology terms	GO:0009937 - regulation of gibberellic acid mediated signaling pathway (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR044184 - F-box protein SNE

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060791.1 F-box protein SNE [Cucumis melo var. makuwa]

9.9e-74

92.62

Show/hide

Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND+LDILIEILKRLDGPS+GVA CVCRLWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_004140002.1 F-box protein SNE [Cucumis sativus]

2.9e-73

92.62

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVA CVCRLWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_016903159.1 PREDICTED: F-box protein SNE [Cucumis melo]

1.7e-73

92.62

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND LDILIEILKRLDGPS+GVA CVCRLWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_022140541.1 F-box protein SNE-like [Momordica charantia]

7.1e-80

99.34

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Query:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
        MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVC LWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
Subjt:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS

Query:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

XP_038902594.1 F-box protein SNE [Benincasa hispida]

9.9e-74

93.96

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVA CVCRLWCTIARSES+WE +CFRHV SPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAT5 F-box domain-containing protein

1.4e-73

92.62

Show/hide

Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVA CVCRLWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A1S4E4K7 F-box protein SNE

8.2e-74

92.62

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND LDILIEILKRLDGPS+GVA CVCRLWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A5A7V4V6 F-box protein SNE

4.8e-74

92.62

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE+NEK+RKFLIND+LDILIEILKRLDGPS+GVA CVCRLWCTIARSES+WE +CFRHV+SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDL
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A6J1CGD7 F-box protein SNE-like

3.4e-80

99.34

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Query:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
        MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVC LWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS
Subjt:  MHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS

Query:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
Subjt:  DLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

A0A6J1I140 F-box protein SNE-like

1.8e-73

91.95

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Query:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL
        N IPE NEKRRKFLIND+LDILIEILKRLDGPS+GVAACVCRLWCTIAR+ES+WEH+CFRHV SPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYS++
Subjt:  NRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDL

Query:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
        VRRVWTQDEVQLSLSLFCVDYYERLTGSGR+ GDASALSLMFLCNTVNV
Subjt:  VRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

9.5e-11

34.78

Show/hide

Query:  DILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV
        D++ E+L+R +  ++  AACV R W  +A  E LWE  C R   +       +++VV +LGG++RL+ V IRP       V  + G      R+  +D+V
Subjt:  DILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSP--LPSSVKSVVAALGGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEV

Query:  QLSLSLFCVDYYERL
        QLSLSLF + +++ +
Subjt:  QLSLSLFCVDYYERL

Q9LUB6 F-box protein SNE

2.2e-36

55.19

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Query:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F INDH D+L+EIL+RLDG S+  AACVCRLW  +AR++S+WE LCFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Q9STX3 F-box protein GID2

8.6e-12

33.63

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Query:  DILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
        +++ E+LK +D  ++ +++CV ++W   A+ E LWE +C RH  +     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+LSL 
Subjt:  DILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF

Query:  CVDYYERLTGSGR
         + YYE+++ + R
Subjt:  CVDYYERLTGSGR

Arabidopsis top hits

e value

%identity

Alignment

AT4G24210.1 F-box family protein

6.1e-13

33.63

Show/hide

Query:  DILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
        +++ E+LK +D  ++ +++CV ++W   A+ E LWE +C RH  +     + ++SVV ALGG++RL+ + + P LS+       R  + +DE++L+LSL 
Subjt:  DILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRS--PLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF

Query:  CVDYYERLTGSGR
         + YYE+++ + R
Subjt:  CVDYYERLTGSGR

AT5G48170.1 F-box family protein

1.6e-37

55.19

Show/hide

Query:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL
        + + N KR++      F INDH D+L+EIL+RLDG S+  AACVCRLW  +AR++S+WE LCFR V SP PS S++SVV+ALGGY+ LY + IRPVL+R 
Subjt:  IPERNEKRRK------FLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPS-SVKSVVAALGGYKRLYMVSIRPVLSRL

Query:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV
            L + +WT+D++QLSLSL+CV YYERL   G   GDA   SL+FL   VNV
Subjt:  GYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

Sequences

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CDS sequence

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AACAAAAGAATGCATAATCGCATACCTGAGCGGAATGAGAAGAGGCGGAAGTTCTTAATCAATGACCATCTCGACATTCTGATAGAAATCCTAAAGCGGCTGGATGGACC
GTCGATTGGCGTGGCGGCGTGCGTCTGCCGCCTCTGGTGCACCATCGCTCGAAGCGAATCGCTGTGGGAACACCTCTGCTTCCGGCACGTGAGATCGCCGCTTCCTTCGT
CGGTGAAGTCCGTGGTCGCCGCCCTGGGAGGGTACAAGCGGCTGTACATGGTGAGCATACGGCCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGG
ACTCAGGACGAGGTCCAACTTTCGCTGTCTCTGTTCTGCGTGGATTACTACGAGCGCCTCACAGGGAGCGGCAGAATCGGCGGCGATGCGTCCGCATTGTCCCTCATGTT
CCTCTGCAACACCGTCAACGTC

mRNA sequence

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Protein sequence

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NKRMHNRIPERNEKRRKFLINDHLDILIEILKRLDGPSIGVAACVCRLWCTIARSESLWEHLCFRHVRSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVW
TQDEVQLSLSLFCVDYYERLTGSGRIGGDASALSLMFLCNTVNV

MS004952 (gene) of Bitter gourd (TR) v1 genome