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MS004958 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004958
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear transcription factor Y subunit B-3
Genome locationscaffold176:1708424..1708954
RNA-Seq ExpressionMS004958
SyntenyMS004958
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK11971.1 uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa]9.7e-5777.72Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI
        MSMLYF+ISKR+SL    PI+KFV+E+EEEE E   E++F SD  K SSASAP T DLLSESECADDNFTTTEESEVEWP+ D     A +P RS DGSI
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI

Query:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        SDEESLIEIALPTGHYVS KFDD +EDEDEDD  F  QKLSDFQK KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_008464163.1 PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]9.7e-5777.72Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI
        MSMLYF+ISKR+SL    PI+KFV+E+EEEE E   E++F SD  K SSASAP T DLLSESECADDNFTTTEESEVEWP+ D     A +P RS DGSI
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI

Query:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        SDEESLIEIALPTGHYVS KFDD +EDEDEDD  F  QKLSDFQK KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_022140584.1 uncharacterized protein LOC111011203 [Momordica charantia]8.4e-8598.32Show/hide
Query:  MSMLYFAISKRNSL--PIPIPIEKFVEEEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEES
        MSMLYFAISKRNSL  PIPIPIEKFV EEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEES
Subjt:  MSMLYFAISKRNSL--PIPIPIEKFVEEEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEES

Query:  LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_022943897.1 uncharacterized protein LOC111448485 [Cucurbita moschata]2.2e-5674.73Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQK-FSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRS-DGSISDEES
        MSMLYF+ISK N    P P+ K + +++++E +      SD + FSSASAPT DLLSESECADDNFTTTEESEVEWPF DR+TA+N  RS DGSISDEES
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQK-FSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRS-DGSISDEES

Query:  LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQK---QKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        LIEIALPTGHYVSHK DDD +D+DEDDMSF  QKLS+FQK   +KNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQK---QKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

XP_038902685.1 uncharacterized protein LOC120089322 [Benincasa hispida]3.9e-5878.57Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRTT--AHNPDRS-DGSISD
        MSMLYF+ISKRNSLPI   +++ V+EEEEEE + +++F SD  K SS SAP TGDLLSESECADDNFTTTEESEVEWP+ D  +   +NPDRS DGSISD
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRTT--AHNPDRS-DGSISD

Query:  EESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVSHKF DD +DEDED MSF  QKLSDFQK KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

TrEMBL top hitse value%identityAlignment
A0A0A0KCP7 Uncharacterized protein8.0e-5777.47Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQ-KFSSASAPT-GDLLSESECADDNFTTTEESEVEWPFSDR--TTAHNPDRS-DGSISD
        MSMLYF+ISKRNSL    PI KFV+EEEEEE + +++F SD  K SSASAPT  DLLSESECADDNFTTTEESEVEWP+ D       NP RS DGSISD
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQ-KFSSASAPT-GDLLSESECADDNFTTTEESEVEWPFSDR--TTAHNPDRS-DGSISD

Query:  EESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        EESLIEIALPTGHYVS KFDD   DEDEDD+SF  QKL+DFQ+ KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  EESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A1S3CMD0 uncharacterized protein LOC1035021114.7e-5777.72Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI
        MSMLYF+ISKR+SL    PI+KFV+E+EEEE E   E++F SD  K SSASAP T DLLSESECADDNFTTTEESEVEWP+ D     A +P RS DGSI
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI

Query:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        SDEESLIEIALPTGHYVS KFDD +EDEDEDD  F  QKLSDFQK KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5A7UY43 Uncharacterized protein1.0e-5674.35Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQ----------KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPD
        MSMLYF+ISKR+SL    PI+KFV+E+EEEE E E   + DQ          K SSASAP T DLLSESECADDNFTTTEESEVEWP+ D     A +P 
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQ----------KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPD

Query:  RS-DGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        RS DGSISDEESLIEIALPTGHYVS KFDD +EDEDEDD  F  QKLSDFQK KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  RS-DGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A5D3CJH9 Uncharacterized protein4.7e-5777.72Show/hide
Query:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI
        MSMLYF+ISKR+SL    PI+KFV+E+EEEE E   E++F SD  K SSASAP T DLLSESECADDNFTTTEESEVEWP+ D     A +P RS DGSI
Subjt:  MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLLSESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSI

Query:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        SDEESLIEIALPTGHYVS KFDD +EDEDEDD  F  QKLSDFQK KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  SDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

A0A6J1CG35 uncharacterized protein LOC1110112034.1e-8598.32Show/hide
Query:  MSMLYFAISKRNSL--PIPIPIEKFVEEEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEES
        MSMLYFAISKRNSL  PIPIPIEKFV EEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEES
Subjt:  MSMLYFAISKRNSL--PIPIPIEKFVEEEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEES

Query:  LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Subjt:  LIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04480.1 unknown protein5.2e-1639.55Show/hide
Query:  FSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLV
        F   S P   + S  +  D         ++     +     N +  DG+I D+ESLIE++LP+GHY+ H +     + +++ +  H  K+ DF+    L 
Subjt:  FSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLV

Query:  ELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        +LL EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Subjt:  ELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

AT5G35870.1 unknown protein2.7e-1247.31Show/hide
Query:  NPDRSDGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
        N D  DG+I DEESLIE++LP+GHY+ H +      +D+  M      + DF+    L++L AE     E++NLIEIDIS+GSIK SRF+I+A
Subjt:  NPDRSDGSISDEESLIEIALPTGHYVSHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTATGCTTTACTTTGCAATTTCCAAAAGAAATTCCCTTCCGATTCCGATTCCGATTGAGAAATTTGTAGAAGAAGAAGAAGAAGAAGAAGCAGAAGCAGAAGTGAG
CTTCGATTCCGACCAGAAATTCTCGTCGGCGTCAGCTCCGACCGGCGATTTGCTGTCGGAAAGTGAGTGTGCAGATGATAATTTCACAACAACCGAGGAATCTGAAGTGG
AGTGGCCGTTTTCCGACCGGACGACAGCCCATAACCCGGACCGTTCCGACGGTTCGATTTCCGACGAGGAAAGTCTGATCGAAATCGCTCTCCCGACCGGACATTACGTC
AGCCACAAATTCGACGACGACGAGGAAGACGAAGACGAAGACGACATGTCGTTCCACTTGCAGAAACTATCGGATTTCCAGAAACAGAAGAATCTGGTGGAGCTGTTGGC
AGAAATTAACGACATCAACGAGGAGGAGAATTTGATTGAGATCGACATTTCCATGGGCTCCATTAAATACTCAAGGTTCGAAATTGAAGCT
mRNA sequenceShow/hide mRNA sequence
ATGTCTATGCTTTACTTTGCAATTTCCAAAAGAAATTCCCTTCCGATTCCGATTCCGATTGAGAAATTTGTAGAAGAAGAAGAAGAAGAAGAAGCAGAAGCAGAAGTGAG
CTTCGATTCCGACCAGAAATTCTCGTCGGCGTCAGCTCCGACCGGCGATTTGCTGTCGGAAAGTGAGTGTGCAGATGATAATTTCACAACAACCGAGGAATCTGAAGTGG
AGTGGCCGTTTTCCGACCGGACGACAGCCCATAACCCGGACCGTTCCGACGGTTCGATTTCCGACGAGGAAAGTCTGATCGAAATCGCTCTCCCGACCGGACATTACGTC
AGCCACAAATTCGACGACGACGAGGAAGACGAAGACGAAGACGACATGTCGTTCCACTTGCAGAAACTATCGGATTTCCAGAAACAGAAGAATCTGGTGGAGCTGTTGGC
AGAAATTAACGACATCAACGAGGAGGAGAATTTGATTGAGATCGACATTTCCATGGGCTCCATTAAATACTCAAGGTTCGAAATTGAAGCT
Protein sequenceShow/hide protein sequence
MSMLYFAISKRNSLPIPIPIEKFVEEEEEEEAEAEVSFDSDQKFSSASAPTGDLLSESECADDNFTTTEESEVEWPFSDRTTAHNPDRSDGSISDEESLIEIALPTGHYV
SHKFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA