CuGenDBv2

Gene ID	MS004962
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RPM1-interacting protein 4
Genome location	scaffold176:1733191..1733421
RNA-Seq Expression	MS004962
Synteny	MS004962
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site IPR040387 - RPM1-interacting protein 4/NOI4

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010787.1 hypothetical protein SDJN02_27583, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.7e-29

88.89

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Query:  QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQSVSSLQQNL
        +EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDPTYK+G+VLGKPQ VSSLQ N+
Subjt:  QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQSVSSLQQNL

XP_022140725.1 RPM1-interacting protein 4 [Momordica charantia]

1.4e-28

96.92

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQS
        + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQS
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQS

XP_022943908.1 RPM1-interacting protein 4-like [Cucurbita moschata]

3.8e-26

90.62

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ
        + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKK GG+PDSPAKDDPTYK+G+VLGKPQ
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ

XP_022947539.1 uncharacterized protein LOC111451376 isoform X1 [Cucurbita moschata]

1.0e-26

93.75

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ
        + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVLGK Q
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ

XP_022947540.1 uncharacterized protein LOC111451376 isoform X2 [Cucurbita moschata]

2.0e-27

95.31

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ
        +QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVLGK Q
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CFY0 RPM1-interacting protein 4

6.8e-29

96.92

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQS
        + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQS
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQS

A0A6J1G736 uncharacterized protein LOC111451376 isoform X1

4.9e-27

93.75

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ
        + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVLGK Q
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ

A0A6J1G769 uncharacterized protein LOC111451376 isoform X2

9.9e-28

95.31

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ
        +QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVLGK Q
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ

A0A6J1I4X6 uncharacterized protein LOC111469905 isoform X2

9.9e-28

95.31

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ
        +QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVLGK Q
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ

A0A6J1I7R1 uncharacterized protein LOC111469905 isoform X1

4.9e-27

93.75

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ
        + EKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDP+YKHGAVLGK Q
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQ

SwissProt top hits

e value

%identity

Alignment

O22633 Protein NOI4

1.9e-15

65.15

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQ
        + +KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    KPQ
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQ

Q8GYN5 RPM1-interacting protein 4

1.0e-05

59.38

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Query:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTG
        +PKFG+WD N+P+SA+G+T IFNK R E+ +G
Subjt:  LPKFGEWDVNDPASAEGFTVIFNKARNEKKTG

Arabidopsis top hits

e value

%identity

Alignment

AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein

5.7e-20

80.36

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Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY-KHGAVLGKP
        PLPKFGEWDVNDP+SAEGFTVIFNKARNEKK GG  DSP KD+P Y K+G VL KP
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY-KHGAVLGKP

AT5G40645.1 RPM1-interacting protein 4 (RIN4) family protein

5.7e-12

54.84

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Query:  QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG--------LPDSPAKDDPTYK
        Q +    PLPKFGEWDVNDPASAEGFTVIF KAR++KKT            ++ ++D+PT K
Subjt:  QEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGG--------LPDSPAKDDPTYK

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein

2.7e-17

61.97

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Query:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQSVSSL
        + +KG   PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    KPQ V  +
Subjt:  LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQSVSSL

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein

4.5e-17

66.67

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Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQSVSSL
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    KPQ V  +
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQSVSSL

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein

1.7e-16

70.69

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Query:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQ
        PLPKFGEWDVNDPASAEGFTVIFNKAR+EKKTGG P SP K    +    G    KPQ
Subjt:  PLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTY--KHGAVLGKPQ

Sequences

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CDS sequence

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CTGCAGGAAAAAGGCAGTAGCAGTCCATTGCCAAAGTTCGGCGAATGGGACGTCAACGACCCAGCATCCGCCGAGGGGTTCACAGTAATCTTTAACAAGGCCAGGAATGA
GAAAAAGACTGGTGGGTTGCCTGACTCTCCAGCGAAGGACGACCCCACGTACAAGCATGGAGCTGTTCTTGGAAAGCCTCAGTCTGTAAGTTCTTTGCAGCAAAATCTTT
TCAATTTCTTT

mRNA sequence

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Protein sequence

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LQEKGSSSPLPKFGEWDVNDPASAEGFTVIFNKARNEKKTGGLPDSPAKDDPTYKHGAVLGKPQSVSSLQQNLFNFF

MS004962 (gene) of Bitter gourd (TR) v1 genome