; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS004966 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004966
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-type domain-containing protein
Genome locationscaffold176:1746334..1746789
RNA-Seq ExpressionMS004966
SyntenyMS004966
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010803.1 putative E3 ubiquitin-protein ligase XERICO, partial [Cucurbita argyrosperma subsp. argyrosperma]8.0e-7690.91Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT--SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSV
        MGLSSLPAPSEGVLGVILVNTALSISIFKG+VRSILHVVGIHLSSPT  SS DSMENAPES+EF LNPNGSYIEEFRSRIPAIL++KVHSCK LE DCSV
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT--SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSV

Query:  CLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        CLTQF P+SEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTP MPEE+TASCFW
Subjt:  CLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

XP_004139989.1 probable E3 ubiquitin-protein ligase XERICO [Cucumis sativus]4.2e-7792.9Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL-SSPT--SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKG+VRSILHVVGIHL SSPT  SS DSMENAPES+EF LNPNGSYIEEFRSRIPAIL+DKV SCKWLE DCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL-SSPT--SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCS

Query:  VCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        VCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE+TASCFW
Subjt:  VCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

XP_008448128.1 PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Cucumis melo]3.6e-7690.38Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT----SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDC
        MGLSSLPAPSEGVLGVILVNTALSISIFKG+VRSILHVVGIHLSS +    SS DSMENAPES+EF LNPNGSYIEEFRSRIPAIL+DKV SCKWLE DC
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT----SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDC

Query:  SVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        SVCLTQFEPESEINHLSCGHLFH VCLEKWLDYWNLTCPLCRTPLMPEE+TASCFW
Subjt:  SVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

XP_022140382.1 probable E3 ubiquitin-protein ligase XERICO [Momordica charantia]8.0e-84100Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL
        MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL

Query:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
Subjt:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

XP_022947327.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]6.1e-7690.13Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL
        MGLSSLPAPSEGVLGVILVNTA+SISIFKG+VRSILHVVGIHLS+P SS+DSMEN+PES++F LNPNG YIEEFRSRIPAIL+DKV SCKWLE DCSVCL
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL

Query:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        TQFEPESEINHLSCGH+FHRVCLEKWLDYWN+TCPLCRTPLMPEEETASCFW
Subjt:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

TrEMBL top hitse value%identityAlignment
A0A0A0KAU4 RING-type domain-containing protein2.1e-7792.9Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL-SSPT--SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCS
        MGLSSLPAPSEGVLGVILVNTALSISIFKG+VRSILHVVGIHL SSPT  SS DSMENAPES+EF LNPNGSYIEEFRSRIPAIL+DKV SCKWLE DCS
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL-SSPT--SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCS

Query:  VCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        VCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE+TASCFW
Subjt:  VCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

A0A1S3BIY9 probable E3 ubiquitin-protein ligase XERICO1.7e-7690.38Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT----SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDC
        MGLSSLPAPSEGVLGVILVNTALSISIFKG+VRSILHVVGIHLSS +    SS DSMENAPES+EF LNPNGSYIEEFRSRIPAIL+DKV SCKWLE DC
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT----SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDC

Query:  SVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        SVCLTQFEPESEINHLSCGHLFH VCLEKWLDYWNLTCPLCRTPLMPEE+TASCFW
Subjt:  SVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

A0A5D3DTM0 Putative E3 ubiquitin-protein ligase XERICO1.7e-7690.38Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT----SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDC
        MGLSSLPAPSEGVLGVILVNTALSISIFKG+VRSILHVVGIHLSS +    SS DSMENAPES+EF LNPNGSYIEEFRSRIPAIL+DKV SCKWLE DC
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPT----SSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDC

Query:  SVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        SVCLTQFEPESEINHLSCGHLFH VCLEKWLDYWNLTCPLCRTPLMPEE+TASCFW
Subjt:  SVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

A0A6J1CGP1 probable E3 ubiquitin-protein ligase XERICO3.9e-84100Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL
        MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL

Query:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
Subjt:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

A0A6J1G653 probable E3 ubiquitin-protein ligase XERICO3.0e-7690.13Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL
        MGLSSLPAPSEGVLGVILVNTA+SISIFKG+VRSILHVVGIHLS+P SS+DSMEN+PES++F LNPNG YIEEFRSRIPAIL+DKV SCKWLE DCSVCL
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL

Query:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW
        TQFEPESEINHLSCGH+FHRVCLEKWLDYWN+TCPLCRTPLMPEEETASCFW
Subjt:  TQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW

SwissProt top hitse value%identityAlignment
Q9SI09 Probable E3 ubiquitin-protein ligase XERICO2.9e-4458.86Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL----SSPTSSADSMENA--PESVEFRLNPNGSYIEEFRSRIPAILYDKVHSC-KWLE
        MGLSSLP PSEG+L VILVNTALSISI KG+VRS L +VGI L    SSP+S   S EN+   ES +FR+    SY+EEFR+R P + ++ +  C K  +
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL----SSPTSSADSMENA--PESVEFRLNPNGSYIEEFRSRIPAILYDKVHSC-KWLE

Query:  QDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS
         +CSVCL++F+ +SEIN L CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Subjt:  QDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS

Q9SUS5 E3 ubiquitin-protein ligase RHA1B3.0e-0926.28Show/hide
Query:  LVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEINHL-SCGH
        ++ T   I  F+ +V ++   +G+    P+    +  +  +     L+ + +   E    IP + +  + +    E  C+VCL+ F  + +I  L  CGH
Subjt:  LVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEINHL-SCGH

Query:  LFHRVCLEKWL-DYWNLTCPLCRTPLMPEEETASCFW
        +FH  CL++W+ D   +TCP+CR   +PEE++    W
Subjt:  LFHRVCLEKWL-DYWNLTCPLCRTPLMPEEETASCFW

Q9XF92 Brassinosteroid-responsive RING protein 15.3e-1446.58Show/hide
Query:  RSRIPAILYDKV-HSCKWLEQDCSVCLTQFEPESEINHL-SCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE
        R  +P I ++++ +S + L ++C+VCL +FE E EI  L +C H+FHR CL++W+D+   TCPLCRTP +P+E
Subjt:  RSRIPAILYDKV-HSCKWLEQDCSVCLTQFEPESEINHL-SCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE

Q9ZT50 E3 ubiquitin-protein ligase RHA2A6.1e-1047.06Show/hide
Query:  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE
        DC VCL++ +   E+  L C H+FH+ CLE WL  +N TCPLCR+ L+ ++
Subjt:  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE

Q9ZU51 E3 ubiquitin-protein ligase RHA2B7.2e-1151.02Show/hide
Query:  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMP
        DC VCL++ +   E+  L C H+FH+ CLE WL + N  CPLCR+PL+P
Subjt:  DCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMP

Arabidopsis top hitse value%identityAlignment
AT1G67856.1 RING/U-box superfamily protein9.0e-1733.1Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL
        MG+S  P  SEGV+ ++++NT +S+S+ K +VRS++++V    +   +  D  ++       R++     I  F S    +  ++    +    DC VCL
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCL

Query:  TQFEPESEINHL-SCGHLFHRVCLEKWLDYWNLTCPLCRTPL
          F+ E E++ L SC H FH  CL+KW    + TCPLCR+ L
Subjt:  TQFEPESEINHL-SCGHLFHRVCLEKWLDYWNLTCPLCRTPL

AT2G04240.1 RING/U-box superfamily protein2.0e-4558.86Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL----SSPTSSADSMENA--PESVEFRLNPNGSYIEEFRSRIPAILYDKVHSC-KWLE
        MGLSSLP PSEG+L VILVNTALSISI KG+VRS L +VGI L    SSP+S   S EN+   ES +FR+    SY+EEFR+R P + ++ +  C K  +
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL----SSPTSSADSMENA--PESVEFRLNPNGSYIEEFRSRIPAILYDKVHSC-KWLE

Query:  QDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS
         +CSVCL++F+ +SEIN L CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Subjt:  QDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS

AT2G04240.2 RING/U-box superfamily protein2.0e-4558.86Show/hide
Query:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL----SSPTSSADSMENA--PESVEFRLNPNGSYIEEFRSRIPAILYDKVHSC-KWLE
        MGLSSLP PSEG+L VILVNTALSISI KG+VRS L +VGI L    SSP+S   S EN+   ES +FR+    SY+EEFR+R P + ++ +  C K  +
Subjt:  MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHL----SSPTSSADSMENA--PESVEFRLNPNGSYIEEFRSRIPAILYDKVHSC-KWLE

Query:  QDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS
         +CSVCL++F+ +SEIN L CGHLFH+ CLEKW+DYWN+TCPLCRTPL  +PE+   S
Subjt:  QDCSVCLTQFEPESEINHLSCGHLFHRVCLEKWLDYWNLTCPLCRTPL--MPEEETAS

AT3G43430.1 RING/U-box superfamily protein3.5e-1332.87Show/hide
Query:  VLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFR---SRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEI
        ++  +L  TAL I++ + +   IL     + S  +SS+ S  ++  S+  +       +  FR    R PA + D           C+VCL   E E EI
Subjt:  VLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFR---SRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEI

Query:  NHL-SCGHLFHRVCLEKWLDYW--------NLTCPLCRTPLMP
          L +C H+FHR C+++WLDY         + TCPLCRTPL+P
Subjt:  NHL-SCGHLFHRVCLEKWLDYW--------NLTCPLCRTPLMP

AT3G61460.1 brassinosteroid-responsive RING-H23.8e-1546.58Show/hide
Query:  RSRIPAILYDKV-HSCKWLEQDCSVCLTQFEPESEINHL-SCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE
        R  +P I ++++ +S + L ++C+VCL +FE E EI  L +C H+FHR CL++W+D+   TCPLCRTP +P+E
Subjt:  RSRIPAILYDKV-HSCKWLEQDCSVCLTQFEPESEINHL-SCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCCTCTCCAGCCTTCCTGCCCCGTCTGAAGGTGTACTGGGTGTGATCCTTGTAAATACAGCCCTATCAATTTCCATCTTCAAAGGTTTAGTTCGATCGATTCTCCA
TGTTGTTGGCATCCATCTCTCGTCGCCTACATCGTCAGCAGACTCCATGGAGAATGCTCCTGAATCTGTAGAGTTCCGTCTTAACCCGAATGGAAGTTACATTGAAGAGT
TCCGCAGCCGGATCCCAGCAATTCTGTACGACAAAGTTCACAGCTGCAAATGGCTAGAACAGGACTGCTCAGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAAC
CATTTATCTTGTGGCCATCTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACATGCCCACTGTGCCGGACTCCATTAATGCCCGAAGAAGAGAC
AGCTTCCTGCTTCTGG
mRNA sequenceShow/hide mRNA sequence
ATGGGCCTCTCCAGCCTTCCTGCCCCGTCTGAAGGTGTACTGGGTGTGATCCTTGTAAATACAGCCCTATCAATTTCCATCTTCAAAGGTTTAGTTCGATCGATTCTCCA
TGTTGTTGGCATCCATCTCTCGTCGCCTACATCGTCAGCAGACTCCATGGAGAATGCTCCTGAATCTGTAGAGTTCCGTCTTAACCCGAATGGAAGTTACATTGAAGAGT
TCCGCAGCCGGATCCCAGCAATTCTGTACGACAAAGTTCACAGCTGCAAATGGCTAGAACAGGACTGCTCAGTCTGCCTAACCCAGTTTGAACCTGAATCAGAGATAAAC
CATTTATCTTGTGGCCATCTTTTCCACAGAGTGTGCTTGGAGAAGTGGCTGGACTACTGGAACCTTACATGCCCACTGTGCCGGACTCCATTAATGCCCGAAGAAGAGAC
AGCTTCCTGCTTCTGG
Protein sequenceShow/hide protein sequence
MGLSSLPAPSEGVLGVILVNTALSISIFKGLVRSILHVVGIHLSSPTSSADSMENAPESVEFRLNPNGSYIEEFRSRIPAILYDKVHSCKWLEQDCSVCLTQFEPESEIN
HLSCGHLFHRVCLEKWLDYWNLTCPLCRTPLMPEEETASCFW