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MS004980 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004980
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRING-H2 finger protein ATL64
Genome locationscaffold176:1869810..1869941
RNA-Seq ExpressionMS004980
SyntenyMS004980
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7010790.1 RING-H2 finger protein ATL18, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-1584.09Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
XP_022140627.1 RING-H2 finger protein ATL64 [Momordica charantia]8.9e-20100Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
XP_022944066.1 RING-H2 finger protein ATL18-like [Cucurbita moschata]2.3e-1584.09Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
XP_023512248.1 RING-H2 finger protein ATL18-like [Cucurbita pepo subsp. pepo]2.3e-1584.09Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
XP_038902378.1 probable E3 ubiquitin-protein ligase RHA4A [Benincasa hispida]2.7e-1684.09Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICL EFAR+DSVYELPDC HV+H NCIEKW+ERN FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
TrEMBL top hitse value%identityAlignment
A0A6J1CHK3 RING-H2 finger protein ATL644.3e-20100Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
A0A6J1FTE6 RING-H2 finger protein ATL18-like1.1e-1584.09Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICLTEFAR+DSV +LPDCAHVFH +CIEKW ERN FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
A0A6J1G855 E3 ubiquitin-protein ligase ATL41-like2.7e-1479.55Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICL EFAR DSV  LPDC+HVFH +CIEKW+ERN FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
A0A6J1I5X8 RING-H2 finger protein ATL183.9e-1377.27Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICL EFAR DSV  L DC+HVFH +CIEKW+ERN FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
A0A7J9GN90 RING-type domain-containing protein5.7e-1268.18Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CSICL EF   D+V ++  C HVFH+NCIEKWMER +FTCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
SwissProt top hitse value%identityAlignment
Q8GW38 RING-H2 finger protein ATL471.9e-0952.27Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        C++CL EF+  D +  LP+C+H FHI+CI+ W+  +N TCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Q9FL07 RING-H2 finger protein ATL463.9e-1052.27Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        C++CL EF+ +D +  LP C+H FH+NCI+ W++ N+ TCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Q9LSW9 RING-H2 finger protein ATL161.5e-0950Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CS+CL+EF  ++ +  +P+C+H+FHI+CI+ W++ NN  CPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Q9SUS5 E3 ubiquitin-protein ligase RHA1B3.3e-0944.44Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKW-MERNNFTCPLCR
        C++CL++F   D + +LP C HVFH  C+++W ++ N  TCP+CR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKW-MERNNFTCPLCR
Q9SZL4 RING-H2 finger protein ATL181.1e-1263.64Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        C ICL EF  +D+V  LP CAH+FHINCIE W+ R + TCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein5.2e-1050Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CS+CL EF   + +  +P+C HVFHI+CI+ W++  N  CPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
AT1G23980.1 RING/U-box superfamily protein1.4e-1052.27Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        C++CL EF+  D +  LP+C+H FHI+CI+ W+  +N TCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
AT4G38140.1 RING/U-box superfamily protein7.8e-1463.64Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        C ICL EF  +D+V  LP CAH+FHINCIE W+ R + TCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
AT5G40250.1 RING/U-box superfamily protein2.8e-1152.27Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        C++CL EF+ +D +  LP C+H FH+NCI+ W++ N+ TCPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
AT5G43420.1 RING/U-box superfamily protein1.1e-1050Show/hide
Query:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR
        CS+CL+EF  ++ +  +P+C+H+FHI+CI+ W++ NN  CPLCR
Subjt:  CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCTCCATCTGTTTGACGGAATTCGCGAGACAAGATTCCGTGTACGAACTTCCCGATTGTGCGCACGTCTTCCATATCAATTGCATCGAGAAGTGGATGGAGAGGAACAA
CTTCACCTGCCCGCTCTGTAGG
mRNA sequenceShow/hide mRNA sequence
TGCTCCATCTGTTTGACGGAATTCGCGAGACAAGATTCCGTGTACGAACTTCCCGATTGTGCGCACGTCTTCCATATCAATTGCATCGAGAAGTGGATGGAGAGGAACAA
CTTCACCTGCCCGCTCTGTAGG
Protein sequenceShow/hide protein sequence
CSICLTEFARQDSVYELPDCAHVFHINCIEKWMERNNFTCPLCR