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MS004998 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004998
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description40S ribosomal protein S24
Genome locationscaffold176:1991559..1991747
RNA-Seq ExpressionMS004998
SyntenyMS004998
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005829 - cytosol (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001976 - Ribosomal protein S24e


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2287806.1 hypothetical protein GH714_002782 [Hevea brasiliensis]2.1e-1177.97Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQLKERKNR KKI GVKK KASDA  G
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
KAF3454354.1 hypothetical protein FNV43_RR04801 [Rhamnella rubrinervis]1.6e-1177.97Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQLKERKNR KKI GVKK+KASDA  G
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
KAG2695252.1 hypothetical protein I3760_07G006500 [Carya illinoinensis]2.1e-1177.97Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQLKERKNR KKI GVKK KASDA  G
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
XP_023904149.1 40S ribosomal protein S24-1 [Quercus suber]2.1e-1173.77Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLGRQ
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQ+KERKNR KKI GVKK KASDA  G++
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLGRQ
XP_023906089.1 40S ribosomal protein S24-1-like [Quercus suber]2.1e-1173.77Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLGRQ
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQ+KERKNR KKI GVKK KASDA  G++
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLGRQ
TrEMBL top hitse value%identityAlignment
A0A068VEG1 Uncharacterized protein1.0e-1177.19Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDAT
        +IY FVENA+KYEPKYRL I+NGLD KVEK  KQLKERK+R KKICGVKK K  DAT
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDAT
A0A2I4DEY5 40S ribosomal protein S241.0e-1177.97Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQLKERKNR KKI GVKK KASDA  G
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
A0A6A6KIK5 40S ribosomal protein S241.0e-1177.97Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQLKERKNR KKI GVKK KASDA  G
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
A0A7N2L6U2 40S ribosomal protein S241.0e-1173.77Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLGRQ
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQ+KERKNR KKI GVKK KASDA  G++
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLGRQ
I3NMM9 40S ribosomal protein S241.0e-1177.97Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
        +IYD VENA+KYEPKYRL I+NGLD KVEK  KQLKERKNR KKI GVKK KASDA  G
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDATLG
SwissProt top hitse value%identityAlignment
Q8LC83 40S ribosomal protein S24-25.8e-1272.73Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASD
        +IYD VENA+K+EPKYRL I+NGLD K+EK  KQ+KERKNR KKI GVKK KA D
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASD
Q90YQ0 40S ribosomal protein S247.6e-0446.03Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGL--DNKVEKKQLKERKNRTKKICGVKKNKASDATLGRQGR
        ++YD ++ A+K EPKYRL  ++GL    K  +KQ KERKNR KK+ G KK     A++G  G+
Subjt:  VIYDFVENARKYEPKYRLIIKNGL--DNKVEKKQLKERKNRTKKICGVKKNKASDATLGRQGR
Q962Q6 40S ribosomal protein S245.8e-0450Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVE--KKQLKERKNRTKKICGVKKNKASDA
        +IYD ++ A+K+EPK+RL  ++GL  K    +KQ KERKNR KK+ G KK+K   A
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVE--KKQLKERKNRTKKICGVKKNKASDA
Q9SS17 40S ribosomal protein S24-17.6e-1271.43Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDA
        +IYD VE+A+K+EPKYRL I+NGLD K+EK  KQ+KERKNR KKI GVKK KA DA
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDA
Arabidopsis top hitse value%identityAlignment
AT3G04920.1 Ribosomal protein S24e family protein5.4e-1371.43Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDA
        +IYD VE+A+K+EPKYRL I+NGLD K+EK  KQ+KERKNR KKI GVKK KA DA
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASDA
AT5G28060.1 Ribosomal protein S24e family protein4.1e-1372.73Show/hide
Query:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASD
        +IYD VENA+K+EPKYRL I+NGLD K+EK  KQ+KERKNR KKI GVKK KA D
Subjt:  VIYDFVENARKYEPKYRLIIKNGLDNKVEK--KQLKERKNRTKKICGVKKNKASD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGATATATGATTTTGTTGAGAATGCAAGGAAGTATGAACCAAAATATAGGCTAATAATCAAGAATGGACTCGACAATAAGGTAGAAAAAAAACAGTTGAAGGAAAGAAA
GAACAGGACCAAGAAAATCTGTGGAGTTAAAAAGAACAAGGCATCAGATGCTACCTTGGGAAGACAGGGAAGA
mRNA sequenceShow/hide mRNA sequence
GTGATATATGATTTTGTTGAGAATGCAAGGAAGTATGAACCAAAATATAGGCTAATAATCAAGAATGGACTCGACAATAAGGTAGAAAAAAAACAGTTGAAGGAAAGAAA
GAACAGGACCAAGAAAATCTGTGGAGTTAAAAAGAACAAGGCATCAGATGCTACCTTGGGAAGACAGGGAAGA
Protein sequenceShow/hide protein sequence
VIYDFVENARKYEPKYRLIIKNGLDNKVEKKQLKERKNRTKKICGVKKNKASDATLGRQGR