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MS004999 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS004999
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRhomboid protein
Genome locationscaffold176:1993780..1994241
RNA-Seq ExpressionMS004999
SyntenyMS004999
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0004252 - serine-type endopeptidase activity (molecular function)
InterPro domainsIPR035952 - Rhomboid-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022954125.1 RHOMBOID-like protein 13 [Cucurbita moschata]7.5e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  L  L  +GL   G+AYYLHYTLVLVIL G+LV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
XP_022992351.1 RHOMBOID-like protein 13 isoform X1 [Cucurbita maxima]7.5e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  L  L  +GL   G+AYYLHYTLVLVIL G+LV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
XP_022992352.1 RHOMBOID-like protein 13 isoform X2 [Cucurbita maxima]7.5e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  L  L  +GL   G+AYYLHYTLVLVIL G+LV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
XP_023520865.1 RHOMBOID-like protein 13 isoform X1 [Cucurbita pepo subsp. pepo]7.5e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  L  L  +GL   G+AYYLHYTLVLVIL G+LV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
XP_038875918.1 RHOMBOID-like protein 13 [Benincasa hispida]9.8e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  +  L  IGL   G+ YYLHYTLVLVIL GVLV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
TrEMBL top hitse value%identityAlignment
A0A5A7TFB1 RHOMBOID-like protein 134.7e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  +  L  IGL   G+ YYLHYTLVLVIL GVLV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
A0A6J1GQ61 RHOMBOID-like protein 133.6e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  L  L  +GL   G+AYYLHYTLVLVIL G+LV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
A0A6J1JPK2 RHOMBOID-like protein 13 isoform X23.6e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  L  L  +GL   G+AYYLHYTLVLVIL G+LV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
A0A6J1JTB3 RHOMBOID-like protein 13 isoform X13.6e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  L  L  +GL   G+AYYLHYTLVLVIL G+LV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
E5GC88 Rhomboid protein4.7e-1868.42Show/hide
Query:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        GIIGI CAIWFYIQKK IGYSHVGL  +       W IITSAF   SVIHLV NMSALWSL  +  L  IGL   G+ YYLHYTLVLVIL GVLV
Subjt:  GIIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
SwissProt top hitse value%identityAlignment
Q9M1B5 RHOMBOID-like protein 135.8e-1355.32Show/hide
Query:  IIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        I+ +   IWF IQKK IGYS VGL  +       W +ITSA    SV+HLV NMSALWSL  +  L  +GL   G AYYLHYTLVLV+  GVLV
Subjt:  IIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
Arabidopsis top hitse value%identityAlignment
AT3G59520.1 RHOMBOID-like protein 134.1e-1455.32Show/hide
Query:  IIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV
        I+ +   IWF IQKK IGYS VGL  +       W +ITSA    SV+HLV NMSALWSL  +  L  +GL   G AYYLHYTLVLV+  GVLV
Subjt:  IIGIFCAIWFYIQKK-IGYSHVGLYMKLP-----WSIITSAFYRTSVIHLVLNMSALWSLWGLPPL-PIGLPLGGIAYYLHYTLVLVILFGVLV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GGGATTATAGGGATTTTCTGTGCTATATGGTTTTACATCCAGAAGAAAATTGGATACTCACATGTGGGGTTGTATATGAAACTGCCATGGAGCATAATAACTTCGGCCTT
TTACCGTACAAGTGTTATTCATCTGGTTCTCAACATGAGTGCTCTTTGGAGTCTTTGGGGTTTACCTCCCTTACCAATTGGGCTGCCCCTTGGGGGCATTGCATATTATC
TCCACTACACTCTTGTACTGGTCATACTATTTGGAGTGCTAGTA
mRNA sequenceShow/hide mRNA sequence
GGGATTATAGGGATTTTCTGTGCTATATGGTTTTACATCCAGAAGAAAATTGGATACTCACATGTGGGGTTGTATATGAAACTGCCATGGAGCATAATAACTTCGGCCTT
TTACCGTACAAGTGTTATTCATCTGGTTCTCAACATGAGTGCTCTTTGGAGTCTTTGGGGTTTACCTCCCTTACCAATTGGGCTGCCCCTTGGGGGCATTGCATATTATC
TCCACTACACTCTTGTACTGGTCATACTATTTGGAGTGCTAGTA
Protein sequenceShow/hide protein sequence
GIIGIFCAIWFYIQKKIGYSHVGLYMKLPWSIITSAFYRTSVIHLVLNMSALWSLWGLPPLPIGLPLGGIAYYLHYTLVLVILFGVLV