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MS005026 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005026
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionOligouridylate binding protein 1B isoform 1
Genome locationscaffold176:2188200..2188351
RNA-Seq ExpressionMS005026
SyntenyMS005026
Gene Ontology termsGO:0006506 - GPI anchor biosynthetic process (biological process)
GO:0097056 - selenocysteinyl-tRNA(Sec) biosynthetic process (biological process)
GO:0097502 - mannosylation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0004376 - glycolipid mannosyltransferase activity (molecular function)
GO:0004828 - serine-tRNA ligase activity (molecular function)
GO:0030170 - pyridoxal phosphate binding (molecular function)
GO:0051751 - alpha-1,4-mannosyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572411.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 5, partial [Cucurbita argyrosperma subsp. sororia]3.0e-0883.78Show/hide
Query:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        RALPR EPFQKFSKAW +PRPKRGFGNSFQPAI + R
Subjt:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
KEH31556.1 hypothetical protein MTR_4g098835 [Medicago truncatula]5.7e-0783.33Show/hide
Query:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        ALPRGEPFQKFSKA  +PRPKRGFGNSFQPAI + R
Subjt:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
OMO87319.1 hypothetical protein CCACVL1_09133 [Corchorus capsularis]2.8e-0681.08Show/hide
Query:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        RALPR EPFQKFSKA  +PRPKRGFGNSFQPAI + R
Subjt:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
RHN63126.1 hypothetical protein MtrunA17_Chr4g0054911 [Medicago truncatula]1.6e-0680.56Show/hide
Query:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        ALP+GEPFQKFSKA  +PRPKRGFGNSFQPAI + R
Subjt:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
XP_010554445.1 PREDICTED: uncharacterized protein LOC104824164 isoform X1 [Tarenaya hassleriana]1.3e-0681.08Show/hide
Query:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        RALPR EPFQKFSKA  EPRP+RGFGNSFQPAI + R
Subjt:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
TrEMBL top hitse value%identityAlignment
A0A072UQC1 Uncharacterized protein2.7e-0783.33Show/hide
Query:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        ALPRGEPFQKFSKA  +PRPKRGFGNSFQPAI + R
Subjt:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
A0A1R3IXK6 Uncharacterized protein1.4e-0681.08Show/hide
Query:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        RALPR EPFQKFSKA  +PRPKRGFGNSFQPAI + R
Subjt:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
A0A396IC08 Uncharacterized protein8.0e-0780.56Show/hide
Query:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        ALP+GEPFQKFSKA  +PRPKRGFGNSFQPAI + R
Subjt:  ALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
A0A445LY15 Uncharacterized protein1.4e-0681.08Show/hide
Query:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        RALP  EPFQKFSKA  EPRPKRGFGNSFQPAI + R
Subjt:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
A0A6A3A274 Oligouridylate binding protein 1B isoform 11.8e-0678.38Show/hide
Query:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
        RALPR EPF+KFSKA  +PRPKRGFGNSFQPAI + R
Subjt:  RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AGGGCTTTACCCCGAGGGGAGCCCTTCCAGAAATTCTCGAAGGCCTGGGGCGAACCCAGGCCCAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATTGCCTCGGTTAG
AACCTCACTAGCTGCGTCATTGCCCCAAGCGCAAAGA
mRNA sequenceShow/hide mRNA sequence
AGGGCTTTACCCCGAGGGGAGCCCTTCCAGAAATTCTCGAAGGCCTGGGGCGAACCCAGGCCCAAGAGGGGGTTTGGAAATAGTTTTCAACCAGCAATTGCCTCGGTTAG
AACCTCACTAGCTGCGTCATTGCCCCAAGCGCAAAGA
Protein sequenceShow/hide protein sequence
RALPRGEPFQKFSKAWGEPRPKRGFGNSFQPAIASVRTSLAASLPQAQR