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MS005060 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005060
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVoltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
Genome locationscaffold176:2409665..2409889
RNA-Seq ExpressionMS005060
SyntenyMS005060
Gene Ontology termsGO:0045490 - pectin catabolic process (biological process)
GO:0050896 - response to stimulus (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647058.1 hypothetical protein Csa_023003, partial [Cucumis sativus]8.9e-2077.27Show/hide
Query:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADA
        ME +T + A+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+RT RRLR L+G    G DA
Subjt:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADA

KAG6570773.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2080.3Show/hide
Query:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG----PPQR
        MEM+T VGA+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+ RRLR L+G    PP R
Subjt:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG----PPQR

KAG7010620.1 Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-2086.21Show/hide
Query:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG
        MEM+T VGA+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+ RRLR L+G
Subjt:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG

VVA31225.1 Hypothetical predicted protein [Prunus dulcis]2.9e-1061.82Show/hide
Query:  LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGA
        LLG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT RRLR ++GPP R +
Subjt:  LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGA

XP_023512260.1 syntaxin-71-like [Cucurbita pepo subsp. pepo]1.8e-2086.21Show/hide
Query:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG
        MEM+T VGA+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+R+ RRLR L+G
Subjt:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG

TrEMBL top hitse value%identityAlignment
A0A0A0KC65 Uncharacterized protein3.0e-2172.6Show/hide
Query:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADARRDTPTL
        ME +T + A+LGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPR+RT RRLR L+G    G DA R  P +
Subjt:  MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADARRDTPTL

A0A251NMS2 Uncharacterized protein2.4e-1064.71Show/hide
Query:  LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPP
        LLG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT RRLR ++GPP
Subjt:  LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPP

A0A5E4FUM3 Uncharacterized protein1.4e-1061.82Show/hide
Query:  LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGA
        LLG+LGR CYAVLCLGV++L V +V+YVG  E  DP +RT RRLR ++GPP R +
Subjt:  LLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGA

A0A660KR43 MLO-like protein2.4e-1065.45Show/hide
Query:  GALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQR
        G LLG+LGR CYAVLCLGVLL++V + H V   EPTDPR+R  RRLR L G P R
Subjt:  GALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQR

A0A7N2KN99 Uncharacterized protein8.2e-1167.31Show/hide
Query:  VGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG
        V  LLG+L RHCYAVLCLGVLLL+V + HYV   EP+DPR+RT RRLR  +G
Subjt:  VGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGGACACGACGGTGGGCGCGCTTCTGGGGAGGCTGGGCCGCCATTGCTACGCCGTTCTGTGCTTGGGAGTGCTGCTTCTGACGGTGGCCGTGGTTCACTACGT
CGGCGACGGGGAGCCCACGGACCCACGCCAGAGGACCACGCGCCGCCTTCGCGTCTTGTACGGCCCGCCTCAACGTGGCGCCGACGCCCGCCGTGACACGCCTACGCTTC
ACGAT
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGGACACGACGGTGGGCGCGCTTCTGGGGAGGCTGGGCCGCCATTGCTACGCCGTTCTGTGCTTGGGAGTGCTGCTTCTGACGGTGGCCGTGGTTCACTACGT
CGGCGACGGGGAGCCCACGGACCCACGCCAGAGGACCACGCGCCGCCTTCGCGTCTTGTACGGCCCGCCTCAACGTGGCGCCGACGCCCGCCGTGACACGCCTACGCTTC
ACGAT
Protein sequenceShow/hide protein sequence
MEMDTTVGALLGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRQRTTRRLRVLYGPPQRGADARRDTPTLHD