; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005061 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005061
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationscaffold176:2410463..2410783
RNA-Seq ExpressionMS005061
SyntenyMS005061
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004149541.1 protein transport protein Sec61 subunit beta [Cucumis sativus]2.0e-3684.4Show/hide
Query:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST ++ S G+VG GSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL

Query:  YRARSGAGV
        YRARS AGV
Subjt:  YRARSGAGV

XP_008463929.1 PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo]2.6e-3684.4Show/hide
Query:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST +  S G+VG GSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL

Query:  YRARSGAGV
        YRARS AGV
Subjt:  YRARSGAGV

XP_022140347.1 protein transport protein Sec61 subunit beta [Momordica charantia]3.6e-46100Show/hide
Query:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR

Query:  ARSGAGV
        ARSGAGV
Subjt:  ARSGAGV

XP_022958107.1 protein transport protein Sec61 subunit beta [Cucurbita moschata]8.5e-4089.72Show/hide
Query:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST  AG+ G+V  GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR

Query:  ARSGAGV
        ARS AGV
Subjt:  ARSGAGV

XP_038902812.1 protein transport protein Sec61 subunit beta [Benincasa hispida]7.2e-3988.79Show/hide
Query:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
        MARG SQSQS SSSTSRPGV APRGSAAATAGLRRRR  ST +A S G+VG GSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR

Query:  ARSGAGV
        ARS AGV
Subjt:  ARSGAGV

TrEMBL top hitse value%identityAlignment
A0A0A0KHR1 Protein transport protein Sec61 subunit beta9.5e-3784.4Show/hide
Query:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST ++ S G+VG GSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL

Query:  YRARSGAGV
        YRARS AGV
Subjt:  YRARSGAGV

A0A5D3CTD4 Protein transport protein Sec61 subunit beta1.2e-3684.4Show/hide
Query:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
        MARG SQSQS++S  ST+RPGV APRGSAAATAGLRRRR  ST +  S G+VG GSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL
Subjt:  MARGTSQSQSASS--STSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKL

Query:  YRARSGAGV
        YRARS AGV
Subjt:  YRARSGAGV

A0A6J1CGL0 Protein transport protein Sec61 subunit beta1.7e-46100Show/hide
Query:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR

Query:  ARSGAGV
        ARSGAGV
Subjt:  ARSGAGV

A0A6J1H102 Protein transport protein Sec61 subunit beta4.1e-4089.72Show/hide
Query:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST  AG+ G+V  GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR

Query:  ARSGAGV
        ARS AGV
Subjt:  ARSGAGV

A0A6J1JZ65 Protein transport protein Sec61 subunit beta4.1e-4089.72Show/hide
Query:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR
        MARGTSQSQSASSSTSRPGV APRGSAAATAGLRRRRL ST  AG+ G+V  GSSGGGNMLRFYTDDAPGLKISPTVVLV+SLCFIGFVTGLHVFGKLYR
Subjt:  MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYR

Query:  ARSGAGV
        ARS AGV
Subjt:  ARSGAGV

SwissProt top hitse value%identityAlignment
P38389 Protein transport protein Sec61 subunit beta1.8e-1664.29Show/hide
Query:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY
        G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV GKLY
Subjt:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY

P60467 Protein transport protein Sec61 subunit beta2.6e-0741.24Show/hide
Query:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA
        T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFYT+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Subjt:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA

P60468 Protein transport protein Sec61 subunit beta2.6e-0741.24Show/hide
Query:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA
        T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFYT+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Subjt:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA

Q5RB31 Protein transport protein Sec61 subunit beta2.6e-0741.24Show/hide
Query:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA
        T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFYT+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Subjt:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA

Q9CQS8 Protein transport protein Sec61 subunit beta2.6e-0741.24Show/hide
Query:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA
        T    +  SS   P  A    +A +T  +R+R+  S G+  +G    AG+   G M RFYT+D+PGLK+ P  VLVMSL FI  V  LH++GK  R+
Subjt:  TSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRA

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-1764.29Show/hide
Query:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY
        G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV GKLY
Subjt:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-1764.29Show/hide
Query:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY
        G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV GKLY
Subjt:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-1764.29Show/hide
Query:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY
        G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV GKLY
Subjt:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein1.3e-1764.29Show/hide
Query:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY
        G  AP RGSAAATA +RRR+ TS       G  G G+SGG  G+ML+FYTDDAPGLKISP VVL+MS+ FI FV  LHV GKLY
Subjt:  GVAAP-RGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGG--GNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLY

AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein2.8e-3375Show/hide
Query:  MARGTSQSQ---SASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGK
        MARG+SQSQ   S  SST+RPG+AAPRGSAAATAG+RRRRL   G   SGG  G G SG  NMLRFYTDDAPGLKISPTVVL+MSLCFIGFVT LHVFGK
Subjt:  MARGTSQSQ---SASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGK

Query:  LYRARSGA
        LY  +SG+
Subjt:  LYRARSGA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGAGGCACCTCTCAATCTCAATCTGCATCCTCTTCGACATCCAGACCTGGCGTCGCGGCTCCGCGTGGCTCCGCGGCGGCGACCGCCGGCCTCCGTCGACGTCG
TCTCACATCCACTGGTTCCGCCGGCTCTGGTGGAGTTGTTGGCGCCGGATCGAGTGGCGGTGGCAACATGTTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTT
CCCCCACCGTCGTCCTCGTCATGAGCCTCTGTTTCATCGGATTCGTTACCGGCCTCCACGTCTTTGGTAAGCTCTATCGAGCGCGATCCGGCGCGGGAGTT
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGAGGCACCTCTCAATCTCAATCTGCATCCTCTTCGACATCCAGACCTGGCGTCGCGGCTCCGCGTGGCTCCGCGGCGGCGACCGCCGGCCTCCGTCGACGTCG
TCTCACATCCACTGGTTCCGCCGGCTCTGGTGGAGTTGTTGGCGCCGGATCGAGTGGCGGTGGCAACATGTTGAGGTTCTACACCGACGATGCTCCTGGCTTGAAGATTT
CCCCCACCGTCGTCCTCGTCATGAGCCTCTGTTTCATCGGATTCGTTACCGGCCTCCACGTCTTTGGTAAGCTCTATCGAGCGCGATCCGGCGCGGGAGTT
Protein sequenceShow/hide protein sequence
MARGTSQSQSASSSTSRPGVAAPRGSAAATAGLRRRRLTSTGSAGSGGVVGAGSSGGGNMLRFYTDDAPGLKISPTVVLVMSLCFIGFVTGLHVFGKLYRARSGAGV