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MS005071 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005071
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60S ribosomal protein L12
Genome locationscaffold176:2456575..2456864
RNA-Seq ExpressionMS005071
SyntenyMS005071
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000911 - Ribosomal protein L11/L12
IPR020783 - Ribosomal protein L11, C-terminal
IPR020785 - Ribosomal protein L11, conserved site
IPR036769 - Ribosomal protein L11, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9587950.1 putative ribosomal protein L11/L12 [Lupinus albus]5.3e-3376.42Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI DGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VE+ +D
Subjt:  VEISRD

XP_004137822.1 60S ribosomal protein L12-1 [Cucumis sativus]4.0e-3377.36Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VEI +D
Subjt:  VEISRD

XP_022935531.1 60S ribosomal protein L12-1-like [Cucurbita moschata]4.0e-3377.36Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VEI +D
Subjt:  VEISRD

XP_034702982.1 60S ribosomal protein L12-like [Vitis riparia]1.1e-3377.36Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS TVKEI GTCVSVGCTVDGNDPKDLQQEI+DGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VE+  D
Subjt:  VEISRD

XP_042954357.1 60S ribosomal protein L12-like [Carya illinoinensis]4.0e-3377.36Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+A++MR RSMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI+DGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VEIS D
Subjt:  VEISRD

TrEMBL top hitse value%identityAlignment
A0A0A0LAX8 Uncharacterized protein2.0e-3377.36Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VEI +D
Subjt:  VEISRD

A0A6A5N6A4 Putative ribosomal protein L11/L122.6e-3376.42Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI DGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VE+ +D
Subjt:  VEISRD

A0A6J1F4X7 60S ribosomal protein L12-1-like2.0e-3377.36Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VEI +D
Subjt:  VEISRD

A0A6J1J2K8 60S ribosomal protein L12-1-like2.0e-3377.36Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS +VKEI GTCVSVGCTVDG DPKDLQQEISDGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VEI +D
Subjt:  VEISRD

A5C9G0 Uncharacterized protein2.6e-3376.42Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKHNGN+SLD+VIE+AR+MR RSMA DLS TVKEI GTCVSVGCTVDG DPKDLQQEI+DGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VE+  D
Subjt:  VEISRD

SwissProt top hitse value%identityAlignment
O50003 60S ribosomal protein L122.7e-3271.7Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKVSVVPS++          ERDRKKTKNIKH+G++SLD+VIE+A+IM+ RSMA +L+ TVKEI  TCVSVGCTVDG DPKDLQQEI+DGD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        VEI  D
Subjt:  VEISRD

P0CT83 60S ribosomal protein L12-A1.7e-2660.38Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLT+QNRQA VSVVPS+S           RDRKK KN+ H+GNVSLDE+IE+AR MR +S+A +LS TVKEI GT  SVGCTVDG +P D+Q+EI +G+
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        +EI ++
Subjt:  VEISRD

P50883 60S ribosomal protein L12-11.4e-3170.87Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR RS+A +LS TV+EI GTCVSVGCTVDG DPKD+QQEI DG+
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEI
        VEI
Subjt:  VEI

Q9FF52 60S ribosomal protein L12-31.8e-3167.92Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+VIE+A+IMR RS+A +LS TVKEI GTCVSVGCTVDG DPKDLQ+EI+ GD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        ++I  +
Subjt:  VEISRD

Q9LFH5 60S ribosomal protein L12-23.0e-3169.9Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR RS+A +LS TV+EI GTCVSVGCTVDG DPKDLQQEI +G+
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEI
        +EI
Subjt:  VEI

Arabidopsis top hitse value%identityAlignment
AT2G37190.1 Ribosomal protein L11 family protein9.6e-3370.87Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR RS+A +LS TV+EI GTCVSVGCTVDG DPKD+QQEI DG+
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEI
        VEI
Subjt:  VEI

AT3G53430.1 Ribosomal protein L11 family protein2.1e-3269.9Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+V E+ARIMR RS+A +LS TV+EI GTCVSVGCTVDG DPKDLQQEI +G+
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEI
        +EI
Subjt:  VEI

AT5G60670.1 Ribosomal protein L11 family protein1.3e-3267.92Show/hide
Query:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD
        VKLTVQNRQAKV+VVPS++          ERDRKK KNIKHNGN+S D+VIE+A+IMR RS+A +LS TVKEI GTCVSVGCTVDG DPKDLQ+EI+ GD
Subjt:  VKLTVQNRQAKVSVVPSSS----------ERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGD

Query:  VEISRD
        ++I  +
Subjt:  VEISRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTCAAGCTCACGGTCCAGAATCGTCAAGCGAAGGTGTCGGTGGTGCCCTCTTCATCAGAGCGCGACCGGAAGAAGACGAAGAATATTAAGCACAACGGAAACGTTTCGCT
AGACGAAGTGATCGAGATGGCGAGGATCATGCGGCTAAGATCGATGGCGACGGATTTGTCAGATACAGTGAAGGAGATTTCGGGAACTTGTGTATCGGTTGGGTGCACCG
TTGACGGGAATGATCCAAAAGACCTGCAGCAAGAGATCAGTGACGGCGATGTTGAAATCTCTCGGGAT
mRNA sequenceShow/hide mRNA sequence
GTCAAGCTCACGGTCCAGAATCGTCAAGCGAAGGTGTCGGTGGTGCCCTCTTCATCAGAGCGCGACCGGAAGAAGACGAAGAATATTAAGCACAACGGAAACGTTTCGCT
AGACGAAGTGATCGAGATGGCGAGGATCATGCGGCTAAGATCGATGGCGACGGATTTGTCAGATACAGTGAAGGAGATTTCGGGAACTTGTGTATCGGTTGGGTGCACCG
TTGACGGGAATGATCCAAAAGACCTGCAGCAAGAGATCAGTGACGGCGATGTTGAAATCTCTCGGGAT
Protein sequenceShow/hide protein sequence
VKLTVQNRQAKVSVVPSSSERDRKKTKNIKHNGNVSLDEVIEMARIMRLRSMATDLSDTVKEISGTCVSVGCTVDGNDPKDLQQEISDGDVEISRD