; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

MS005082 (gene) of Bitter gourd (TR) v1 genome

Gene IDMS005082
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionexosome complex component RRP41-like
Genome locationscaffold176:2567295..2570218
RNA-Seq ExpressionMS005082
SyntenyMS005082
Gene Ontology termsGO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0071028 - nuclear mRNA surveillance (biological process)
GO:0009845 - seed germination (biological process)
GO:0016075 - rRNA catabolic process (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0016740 - transferase activity (molecular function)
GO:0008408 - 3'-5' exonuclease activity (molecular function)
InterPro domainsIPR001247 - Exoribonuclease, phosphorolytic domain 1
IPR015847 - Exoribonuclease, phosphorolytic domain 2
IPR020568 - Ribosomal protein S5 domain 2-type fold
IPR027408 - PNPase/RNase PH domain superfamily
IPR036345 - Exoribonuclease, PH domain 2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570792.1 Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia]4.9e-13495.35Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPT HKTRPPIFRSD+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD

XP_022140702.1 exosome complex component RRP41-like [Momordica charantia]1.6e-14099.61Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD

XP_022944714.1 exosome complex component RRP41-like [Cucurbita moschata]4.9e-13495.35Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPT HKTRPPIFRSD+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD

XP_022986160.1 exosome complex component RRP41-like [Cucurbita maxima]4.9e-13495.35Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPT HKTRPPIFRSD+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD

XP_023512894.1 exosome complex component RRP41-like isoform X1 [Cucurbita pepo subsp. pepo]4.1e-13394.96Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPT  KTRPPIFRSD+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD

TrEMBL top hitse value%identityAlignment
A0A0A0KEK6 Uncharacterized protein3.2e-13192.25Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATP TTTYSPSPT+HKTRP +FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENK+FSSMLHK+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLID +LEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESA-TISQD
        LMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKESA TIS++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESA-TISQD

A0A1S3CKF3 exosome complex component RRP41-like1.7e-13293.44Show/hide
Query:  MAKKATP-ATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
        MAKKATP  TTTYSPSPT+HKTRPP+FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT
Subjt:  MAKKATP-ATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYT

Query:  TFATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDG
        TF+TPVRGQGSENKEFSSMLHK+LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP+LEEENYQDG
Subjt:  TFATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDG

Query:  SLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD
        SLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKLV+IMRSCLKES ATIS++
Subjt:  SLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD

A0A6J1CHT0 exosome complex component RRP41-like7.6e-14199.61Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD

A0A6J1FYV1 exosome complex component RRP41-like2.4e-13495.35Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPATTTYSPSPT HKTRPPIFRSD+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAII ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD

A0A6J1JDA9 exosome complex component RRP41-like2.4e-13495.35Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MAKKATPAT+TYSPSPT HKTRPPIFRSD+ DWVRPDGR FHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        F+TPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDP LEEENYQDGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD
        LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLV IMRSCLKES AT+S++
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKES-ATISQD

SwissProt top hitse value%identityAlignment
A2RVK7 Exosome complex component RRP41-like5.8e-10673.54Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP   + ++R PIF+  + DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FA+P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL +IMR CLK+SA+ S +
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD

O26779 Exosome complex component Rrp414.6e-2630.77Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFATPVR---GQGSENKEFSSMLHKALEGAIIL
        VR DGR F + RP     G +  A GS+Y EFG  K++V+V+GPRE++ + +   D   + C  +   F+   R   G    + E S +  +AL  A+IL
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSDIGRLNCSVSYTTFATPVR---GQGSENKEFSSMLHKALEGAIIL

Query:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEG
        E FP++ +DVF  VLE+ G      I+ AS+ALADAGI + D+V + +    G  +++D   EE+      + +  +P   E+T L   G  +  +    
Subjt:  ETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEG

Query:  MQLCLDASCKLVKIMRSCLKE
        + L ++   ++ ++ +  L++
Subjt:  MQLCLDASCKLVKIMRSCLKE

O59223 Exosome complex component Rrp412.7e-2634.09Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFATPVR---GQGSENKEFSSMLHKALEGAIILE
        R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   F+   R   G    + E S ++  ALE A+ILE
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFATPVR---GQGSENKEFSSMLHKALEGAIILE

Query:  TFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGM
         FP+T++DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY +  + +  MP + ++T L + G  +  +  E +
Subjt:  TFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGM

Query:  QLCLDASCKLVKIMRSCLKE
        +L +  +  + +  R  LKE
Subjt:  QLCLDASCKLVKIMRSCLKE

Q6P0I8 Exosome complex component MTR36.2e-3135.9Show/hide
Query:  RSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFATPVRG---QGSENKEFSSMLHKA
        ++ +A   R   RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C      F+   RG   QGSE ++ S+ L ++
Subjt:  RSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVSYTTFATPVRG---QGSENKEFSSMLHKA

Query:  LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYQD--GSLMITCMPSRYEVTQ
        L   + L  +P++ +DV  +VLE+ GS L   ++CAS+ALADAGI +YD+V   ++   G   L+DP   E      E Y D  G + +  +P+  +V+ 
Subjt:  LEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEE------ENYQD--GSLMITCMPSRYEVTQ

Query:  LTITGEWSTAKINEGMQLCLDASCKLVKIMRSCL
        L   GE     + E M+ C+D   KL  +++  L
Subjt:  LTITGEWSTAKINEGMQLCLDASCKLVKIMRSCL

Q8U0L9 Exosome complex component Rrp411.6e-2634.55Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFATPVR---GQGSENKEFSSMLHKALEGAIILE
        R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE   K +   D   L    +   F+   R   G    + E S ++  ALE A+ILE
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-SKKAMMYSDIGRLNCSVSYTTFATPVR---GQGSENKEFSSMLHKALEGAIILE

Query:  TFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGM
         FP+T +DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY +  + +  MP + ++T L + G  +  +  E +
Subjt:  TFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGM

Query:  QLCLDASCKLVKIMRSCLKE
        +L +  +  + +  R  LKE
Subjt:  QLCLDASCKLVKIMRSCLKE

Arabidopsis top hitse value%identityAlignment
AT3G46210.1 Ribosomal protein S5 domain 2-like superfamily protein6.6e-1231.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G46210.2 Ribosomal protein S5 domain 2-like superfamily protein6.6e-1231.29Show/hide
Query:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQ-GSENKEFSSMLHKALEGAIILETFP
        R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++         +     P  GQ G   KE+  +L + ++   +L   P
Subjt:  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQ-GSENKEFSSMLHKALEGAIILETFP

Query:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE
         TT  V   V+   GS LP  I+ A  AL DAGI +  L  ++   C  +N  L++DP   EE
Subjt:  KTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDPMLEEE

AT3G61620.1 3'-5'-exoribonuclease family protein1.3e-2029.6Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFATPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   F+T  R +      + E S ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFATPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCLDASCKLVKIMRSCLKES

AT3G61620.2 3'-5'-exoribonuclease family protein1.3e-2029.6Show/hide
Query:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFATPVRGQ---GSENKEFSSMLHKALEGAII
        +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   + C  S   F+T  R +      + E S ++ + +E  I+
Subjt:  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGRLNCSVSYTTFATPVRGQ---GSENKEFSSMLHKALEGAII

Query:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINE
         E  P + +D+F  VL++ G      I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P   +V+ L +  +        
Subjt:  LETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINE

Query:  GMQLCLDASCKLVKIMRSCLKES
           L  +    + + +R  L+E+
Subjt:  GMQLCLDASCKLVKIMRSCLKES

AT4G27490.1 3'-5'-exoribonuclease family protein4.2e-10773.54Show/hide
Query:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT
        MA K   AT TYSP   + ++R PIF+  + DW RPDGRGFHQCRPA  +TGAV++ASGSAYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT 
Subjt:  MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTT

Query:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS
        FA+P  GQG+++KE+SSMLHKALEG I++ETFPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC GK+L+IDP+ EEE  +DGS
Subjt:  FATPVRGQGSENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGS

Query:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD
         M+TCMPSRYE+TQLTITGEW+T  INE MQLCLDAS KL +IMR CLK+SA+ S +
Subjt:  LMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAAAAAGCGACGCCAGCTACGACTACATATTCTCCGTCTCCTACTATCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGAAGCCGACTGGGTTCGTCCGGA
TGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCATATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTG
TATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGCCTCAATTGTAGTGTCAGTTATACAACATTTGCCACTCCAGTTCGTGGACAGGGATCA
GAAAACAAGGAGTTCTCCTCAATGCTACACAAAGCTTTGGAAGGGGCAATTATATTGGAGACATTCCCCAAGACAACTGTGGATGTATTTGCCTTGGTGTTAGAGTCTGG
TGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCGGGGATTATGCTTTATGATCTTGTTGCCTCGGTTTCTGTGAGTTGCTTCGGTAAGA
ACCTCCTTATTGATCCTATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGAGGTCACTCAGCTCACTATCACAGGTGAA
TGGTCAACTGCCAAAATCAACGAGGGTATGCAGCTTTGCCTTGATGCTTCGTGTAAGCTTGTGAAGATCATGCGATCATGCTTGAAGGAATCTGCCACCATTTCACAGGA
T
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAAAAAGCGACGCCAGCTACGACTACATATTCTCCGTCTCCTACTATCCACAAAACCAGGCCACCCATCTTCAGAAGCGACGAAGCCGACTGGGTTCGTCCGGA
TGGCCGAGGCTTCCACCAGTGCCGTCCTGCTTTTTTTAGGACTGGTGCTGTAAATGCTGCTTCAGGATCTGCATATGCAGAGTTTGGTAATACCAAGGTCATTGTTTCTG
TATTTGGCCCTAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGCCTCAATTGTAGTGTCAGTTATACAACATTTGCCACTCCAGTTCGTGGACAGGGATCA
GAAAACAAGGAGTTCTCCTCAATGCTACACAAAGCTTTGGAAGGGGCAATTATATTGGAGACATTCCCCAAGACAACTGTGGATGTATTTGCCTTGGTGTTAGAGTCTGG
TGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCCGATGCGGGGATTATGCTTTATGATCTTGTTGCCTCGGTTTCTGTGAGTTGCTTCGGTAAGA
ACCTCCTTATTGATCCTATGTTGGAAGAGGAAAACTACCAAGATGGAAGTCTGATGATAACTTGTATGCCATCTCGTTACGAGGTCACTCAGCTCACTATCACAGGTGAA
TGGTCAACTGCCAAAATCAACGAGGGTATGCAGCTTTGCCTTGATGCTTCGTGTAAGCTTGTGAAGATCATGCGATCATGCTTGAAGGAATCTGCCACCATTTCACAGGA
T
Protein sequenceShow/hide protein sequence
MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGS
ENKEFSSMLHKALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGE
WSTAKINEGMQLCLDASCKLVKIMRSCLKESATISQD